BtaEX6009546 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005180 | RBMS1
Description
Bos taurus RNA binding motif, single stranded interacting protein 1 (RBMS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035361]
Coordinates
chr2:36176168-36178719:+
Coord C1 exon
chr2:36176168-36176248
Coord A exon
chr2:36177559-36177643
Coord C2 exon
chr2:36178495-36178719
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTGCTTTGTTGTAGGAG
3' ss Score
10.24
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TACATGCCTGCCACGTCAGCTATGCAAGGGGCCTACTTGCCACAGTACACACACGTGCAGACGGCGGCAGTTCCTGTGGAG
Seq A exon
GAGGCGAGTGGTCAGCAGCAGGTGACTGTGGAGACTTCTAATGACCATTCTCCATATACCTTTCAACCCAATAAGTAACTGTGAG
Seq C2 exon
ATGTACAGAAGGGTGTTCTTACATGAAGAAGGTTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005180-'21-21,'21-20,24-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGCAAGGGGCCTACTTG
R:
ACGTTTTCAAGAACCTGTGCA
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]