MmuEX0039194 @ mm10
Exon Skipping
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60750193-60755496:-
Coord C1 exon
chr2:60755416-60755496
Coord A exon
chr2:60753730-60753814
Coord C2 exon
chr2:60750193-60752982
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGCATTCTGCTCTGTTGTAGGAA
3' ss Score
10.08
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TACATGCCTGCAACATCAGCCATGCAAGGAGCCTACTTGCCACAGTATACACACATGCAGACCGCGGCGGTGCCCGTTGAG
Seq A exon
GAAGCAAGTGGCCAGCAGCAGGTGGCTGTGGAGACGTCTAATGACCATTCTCCATATACCTTTCCACCCAATAAGTAACTGTGAG
Seq C2 exon
ATGTACCGAAGGGAGTTCTTACCTGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGAAAAAAAAAAAAAAAAACGGAAAAAAAATCAAAGATTTTTATCAAATATAATGATGCAAAAAAAGAAAAAGAAAAAAAAAGAGAAAAAGAAAACTTCAATTTTCTGGGTATGCACAAAGACCACGAAGACTTATCCAAGTGCATGACCGGATTTTTGTGGTTTTGTTCATTTTGTGTTTAATTTGTCTTTTTTTTTTCAGCTGTATGAAATGGGCTTTCTGAAGTTTCAATTGTCCGACTTCACCCATGGTGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGCCTACTTGCCACAG
R:
ACGTTTTCAAGAACCTGTGCA
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types