MmuINT0132931 @ mm10
Intron Retention
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60750193-60753814:-
Coord C1 exon
chr2:60753730-60753814
Coord A exon
chr2:60752983-60753729
Coord C2 exon
chr2:60750193-60752982
Length
747 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CTTTTATCTTTCTTTTCCAGATG
3' ss Score
13.25
Exon sequences
Seq C1 exon
GAAGCAAGTGGCCAGCAGCAGGTGGCTGTGGAGACGTCTAATGACCATTCTCCATATACCTTTCCACCCAATAAGTAACTGTGAG
Seq A exon
GTATGAGGGCAAAGTCTGTAACTGCAGAGCTCAAATGAAGCAGTCTGGGGTACTGTTATCAAACGATGCTTAGAATAATTCAGATCCAATGTGTTTATGGATTTGTAGATTCTGTCTAGATAACTAATGATGCTTATATTGAAATAAAATATGTTTTTCTCTACCTCAAAATTCATAAAAATCTAAGGCATCATAGAACATACTGGGTCCCAAAATTGCCCTGTACTAGAAGCATCTTATATCACATTGCTTAAATACTGACTAAGGAAGATAAAGCGTTAAGATGTTGCCTAATCAAGTCTCACAAGGTCAGCAACATCTCGGCTATGAATTCAGATTATTAGCCTCCTTGGAGCAAAAGATGACATTACCAGCTCTCACTGGAGTCACACATTTCAAACTTCACTCTGTCACGCGTATCTTAGTCAAACAACTATACGTAATCCAGCTGCTGGATTGTCTGGTAACAAACAGTATGTGTTGTTTGTTGATCTCACCAAGTCACCCTTTGAGACCCATGTGGAGTTGGCTGGGACTCCCTTGAGGAAGGAACTATTTTGCAAGTCCCAAATTTGAAAGGTAGACTCAAGAAATTGAAAGCAGTCCCCAGGTCCCCAGTTTATGTCCCTTCGTCTGGTACCGTGGATGGGCACACAGCCTTCATCTCTTTAAGACAAAAGATGACGAAGCACTGCCACTTGGTTATTAAATCAGCAAAGACATTGGTCTTTTATCTTTCTTTTCCAG
Seq C2 exon
ATGTACCGAAGGGAGTTCTTACCTGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGAAAAAAAAAAAAAAAAACGGAAAAAAAATCAAAGATTTTTATCAAATATAATGATGCAAAAAAAGAAAAAGAAAAAAAAAGAGAAAAAGAAAACTTCAATTTTCTGGGTATGCACAAAGACCACGAAGACTTATCCAAGTGCATGACCGGATTTTTGTGGTTTTGTTCATTTTGTGTTTAATTTGTCTTTTTTTTTTCAGCTGTATGAAATGGGCTTTCTGAAGTTTCAATTGTCCGACTTCACCCATGGTGTCCCGTGCTTGCGAGTGTCGCAGTAACTCAGTGTTGGCCTCACTGTCTTTGCTTAGCTCTCCGTTTTTTTCTTTCGACGTAGTGTGAAGTGTCTTATCCTTTTCTATGAATTCCAATTTGCCTTAACTCTTTTGATGCTGTAGCTGTTTCAGTAAAGTTAGTTCAACCTAATGATGTAGAATGCTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTTTAAAAGGTAGTCAATAAAAGTTGCTGAAATTTTGGCTTTTTTAAATATGTAGTAGGTGTTTTTAATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACACATTTTCTGACTGGGGGGACTTTTAATAGGGTAAATTGTTTATAAGGCTGTACACTAACAGTTTCCCCTAATAGTGTGACTGATTTAGGATATCTGCTGTATGATGCAATGTAAAGTCTTTTTTGCCTTTTTTTCAGGAAGAAAAAAAAATAAAACTTAACGATGTTCTAGGTTTAGTGTAGGTAGCTGCGGGGATGGGGCGGGGGCGGGGGGCGGGGGAGGGGAGTCACCGAATGTTTTGTCCTTTATACTAACATAGTGCTTTAGAAAGAGAACCACGCTTGAGATCTGAGAAACCGATGGCGGGGGGGAAAATGGGGTTGCTGTTGAAACTAGATGGTGAAAGCTAAAAGTAAGGATTTCTCTTCAAACCTAAGCTGAGATATGACCAGAAGGAAAACGATTGGCTACGAGCTCTCTCTCTCTCTCTCCTTCTCCCCACCCCCCTCTCTCTCTTCCCCCCACCCCTCTCTCACTCTCATTCTCTATTAGGTAAATTTGAAAAACTAAACAAACAAACAAACAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGACGAGCCAGTAGCCAGCAGCTCCACCTATCTCAGCGTCACATCCTGTCTGTCCTTTCTTTTTTGCCGGACCAGTTTGCGGTTAGGAGAATGTGCCTTTTTTGTACCTTCGCATTAGGTTTTATAATTTTAACTGATGTATGGACTCACAGAGACAAAATTTAAAAAATTTAAAAATTAAAAAAAAAAAAAAAAAAAAGCAAGCATGAAGGAAGATTTGAATCCAGGCAGTGCCGCCCTCTGACGTCATCACTACAGGTGTTTGCGTGGAAAGAAAACCAACTTTGAAACTATGAAATTCCTGATTCATAAATACAGTTATTTCTACTTTAGTACATACAAGATAACTCACTGTTATTAACACTCTTTTTTATTAAGGCAGTTGCATACGTTTTCAAAAGCAATGGTGAATTAAGTTGTCTTCCAAAACTGTGTACTTGTCTGGTCAGCTGTACGTGATCAGTTATCTACCTCAGAGGCTATTTTTCTTTTGTGCTGGGACAGGTTGCTGGCCCTCCCTGTTTCCACCGACCAAATCCTCCTAGCTCAGGAGCTAGGGCTAAGCAGTTACTTCTTTTGAGTATTTTTTAGTTCTTAAATTTTATTGCTTGTATTTGATGATAGATGTCAGCGACATTTCATAGTTTCAAAAATCCTTGCTGCTCTGAAAGTGTAGATTCTAGTGAAAATTACATAGTCATAAGAGAAATGTGGGGTTTTTTGTTTTTGTTCTTGTTCTTGGTTTTGGTTTTGTTTCTGTTTTTGTTTTTTTTAAGTTGTGGTATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCCAAGACTCTCACTACTTGATATTTTTTTCCATTAGTTAAGACAGAAAGTTGATAGCTCAGTCAGTAGGGGAGGGGAGATCTGCTGCTAGGTATGTCTGAACTAAGTGCCATACTCGTCTGGGTCAGATTTGGGAAACAACCTCTGTACATATAAAAGAAAAAAAATGTCAGTTAAACATCACATAGTAGACAGCCATTAAATTATAAAAAAAATTAATTTATGAAGAAAGACCTTTTGTACAGATTGAAAAAAAAGATTTTCATAGAGATATCTATATGATCAAGAGAGTTAATTTTTTATTTTTGTTCTACTAGTGCTACATACTTGCCAGTGGTGACTTATTTACCGGTTCAAGATGACTCTGTAGTTTTCTTTCCTAGGACTTGTTAAACGCCAAAAGACATTTTTGAACTGTACATTTGATCAGATTGTTAGCTTTTTCTGTTTTATTTCTTTTGAGAACCTTTGAATAAAAACATCTGAAACTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970:ENSMUST00000028347:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCCAATAAGTAACTGTGAG
R:
GTGCATACCCAGAAAATTGAAGT
Band lengths:
382-1129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types