GgaINT0046225 @ galGal3
Intron Retention
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23349274-23352391:+
Coord C1 exon
chr7:23349274-23349358
Coord A exon
chr7:23349359-23352136
Coord C2 exon
chr7:23352137-23352391
Length
2778 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTGACCTTTCTGTGTTGCAGATG
3' ss Score
11.89
Exon sequences
Seq C1 exon
GAAGCCAGTGGTCAACAGCAGGTTACAGTAGAGACGTCCAGTGACCATTCTCCGTATACGTATCAACAAAATAAGTAACTGTGAG
Seq A exon
GTAGGGGCTCCTCCTGTCACATGAAAGATGTGAATTCAAATATATATTTTTTTCATAACATGCAGTGCTCTGTATTGAAAGTTCTTGCACGTATCATATAAATAACATTGATCATATCTGGGGACGGACACTGAAATTAACATGAATTTGGCCAGAGTTAGAAGTAAGGGAAGGGAAAAAGTGAGTTAATGATTTACAAATTTACAAACACTTTGATACTTTCTCTATAGCATATACAGATTATATTCTATTTTAATTTGTTCATCTGGTATACAGCATGTGGTGTACAAGAATAACAATGAGTTAGTGCAGAAAACCTTTGTATCAGATTGGGAAGCAGCTTCACAACTGACTTAGGGAGTATGTGGGTGGGTTCTGGTCTATTAGAAATCCTTGCTGACGTTCTCTTGCAAATTTCCCTGCCCATCCTTTATTCCAGGAAGCCGCAGTTTGGTCCAGAATTTTGTCAATTGATTTTTAATGCAGGTCCTGGATTGGCTCTAATTCCAGAGTCATTTATTTACTTTCCTGCTGCACGTTTCCTGTGTCTCTGCTTGCATTCCCTACTGACCCTTCATTAGTTTTATCCTAACTCCTTCTGTATACCATTTTTCTTTCTGTAGATTGCTATCCTGAAAATGCTGTTTGCGCTAACCATCCCCTCCTCCATCCTCCATGTTTCAAATTACTGGAAGTTAATTTTTCCCTAGCCCATCCTTTTCTGGGTGCTTTGTAAACCAAGCAACTGGACTACATAATTTTTAAATCAAATTTTGTAAGACCTAATACTGACAAATTCCATTCAACTTCACGTATGTACGAGAGGTGGTCTTAGAAGTGTTTTTTTCACAGCCCTCGTGCCATTCCTAAGGTATTCCAACACCTCACGCAGTTACGTGCAAGGGTTTCCAATGGTGTGATACTCTCCTTAAAATGCACAGATCTCACAGTACACACATTTTGCCATCACTTTTGATTTTGCAGGTCAACTGTGTTATTTGACAGCACCGCTCTCATCCCTATTATTGGCATAACAGCTTCTTACATGTTCAAGTATGTAAAGATAGAAACAAATGGATTGGGAAACTGTGCACATTCGACAGGTGGCACAGTCTGCATAGCACAACGTATGACCTGTGTTTATTATTTTAGTCTGGCCAAACGCCGGCATCTAGAGCAAGCCCACATCCTTGGTTTTCTTCCAGGGCAGGGAGAAGCAAAGCCACAGACTCTTCTCATTCTCCATCTCCTAATGTTAAAACCGTGGCTCCCGCATGCTTCCCATGCCAAGGCTATTGGCTGGTGTTAACCACTTTTCAAGGAATTATTTGTTTTGCCTTTAAGTCTTCCCTGTGGGCATGTAAAGCCTTCTTGCAAACAGAGATCTGTAGTAGGTGGGGCAACAGCATCCTGCATTGCATCCCCACACCTCCAGCAGTGTGCCAGACTCTTTCCCATAGATGGGGGCCATAGGAGGAGCAGCATGTAGACCTCCTGAAGGGGTATCAGGTGTGCTGCAACCTGAGAAACATTGTGTAACGTTGACTCTGTGGCACATTGAGGTCTGTGAGCAACTCTGGGCGCTTGCTGGAAGTGGTAAAATCCTGCATGATTTTATTCCTAGAGAATCTCTGCTGGCTGCACTGATCTGCACAGGGAAGTCTGTGTACTGCAGCAATGGGTGCGGGCACGTGGGGAAGGGTAATATTGCTCAGCTGATTTCAGCCCCAAAGTATGGCATTTGGTATTTCTGTCCTCAGAGCATGCCAGTACTTGTCATTTATCAGGCAGGTGAAGGGGAGGGAACTGATGGTTATTTCTTGCCCTACATACAGGGAACGCTGCAGCCTCTTAATTGTTGTAGTTTTGTCACTGCTGACAAATGGAAGCTTTTTTCTAAATATGTGCACAGCACTTTTGGAGATGGCCTATTAAAAGTCAAGATATATTTTGCCATGAATAAGTGGCAAATGACAACCAGCACACTGACACGAGTCGAAGCAGTCCATCAGGAATACCCAGTGCCTTTCCCTTAATGAATACACTTAATAGCTGTATTGCTTCTTTTTGACAAGTTGCTGCTATGTGAAAATAGTCAAAGGGACTTGAAAATAGCCCAATGTAATTGAATGTGCACCTATGAATGTAGAAACTTTAAATTAACATGCTGCCTTTCCTTGAAAAATTCCAAAATTGTCTTAACTTTCATTAGCTGAATATTTTTTTAAAACCCATCTGGTAACATAAGCCGATATAGCAAATGGAAGAGCCTCCCTTCATGTTTAATGAGCCCTGAATTGCTGTTAAATGTTAACCAGCGTGGAGGCACAGGAGCTGTCTGTGCTTTGGCTGCGGGGAGCTGTGCACGCCCTCCCTCTTCATCCAGAGATGAAAGCCTTTGGATGCAGCAGCAGTGAGCTCACACACTCATCTGCTTTGGGTCAATTAAAAGCAACCAACAAGAAGAAAGCAGGCAGGGAGATACCTTGGAACGCAGCCTCCCAGCTCCTCGGTGGGCATTCTGCGTGCTTATCTTTATTAGAGGTAAAGGGGGAAAACTCACTGGGGAGGCCGCATGCTGGCAGAGAGCCGTATCCCAGCGAGTGCCGAGCACCTGGAGTGCCACCTGGCTTTGCTTCTCAGATTTGTGCTCAGATTCACTCGGTCTGCTCCCAGCTGTCTAGAGGAGGAGGAGGTGTCATAGCTCGTGGACAGCCACGTTAGCAAAATGAATGCAATTCATAACCCTGCTGTAGCTCTGACCTTTCTGTGTTGCAG
Seq C2 exon
ATGCCCGGTGTTGACCCGGCCTGGAGAAGGGTGCAAAGGCTGAAACAATCATGGATTTTACTGATCAATTGTGCTTTAGGAATTATTGACAGTTTTGCACAGGTTCTTGAAAATGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAGAAAAACCTTAAATTCATCTAGTAGCTGTTCCCATGAACAGGTTTATTTTAGTAAAAAAAAAAATTTTTATCAAGTGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132:ENSGALT00000033119:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]