RnoINT0125311 @ rn6
Intron Retention
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46803355-46804455:-
Coord C1 exon
chr3:46804371-46804455
Coord A exon
chr3:46803652-46804370
Coord C2 exon
chr3:46803355-46803651
Length
719 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CTTTTATCTTTCTCTTCCAGATG
3' ss Score
13.52
Exon sequences
Seq C1 exon
GAAGCAAGTGGCCAGCAGCAGGTGACTGTGGAGACGTCTAATGACCATTCTCCATATACCTTTCCACCCAATAAGTAACTGTGAG
Seq A exon
GTATGAGGGAAAAGTCTGTAACCGCAGGGCTCAAGCGAAGCTATCTGGGGTACCGTTATCAAATGATGCTTAGAATAACTCAGATCTAATGTGTTCGTGAATTTGCAGAGTCTGTCTAGATAACAAGCAGCGCTTCTGTTGAAGTAAAATACATTTCTCTCTGCCTTCAAAAGTCATAAAATCTAAGACATCCTAGAACAACATACTGGGTTCCAAAATCGTCTTAATAATAAAAGCATCTTCTATCACATTGCTTAAATAACTAAAGAAGATAAAGCACAAGTTGCTGCCTTATCGAAGTCTCACAAGAACAGCAGCTTCTTGGCTGTGAATTCAGAGTGTTAGCCTCCTTGGAGCAAAGGATTATGTCACCCGCTCTCACTGAGTCACAGAGTTCAAACTCCACTTTACCATTTGTATCTTAGTCAAATAACGATACGGAATCCAGTTTCTGGATTGCCTGGTAAAACGGTACGTGTCGTTTGTTGGTCTCACCAAGTCACCCTTTGGGACCCGCCCACACGGAGTTGGCGGTGGCATTTTTGCAAGTGCCAAATTTGAAAGGTAGACTCAAAGGTCTCCAGGTGCCCAGTTTATGTCCCTCCGTCTGCCACCATGGATAAGCACAGCCTTCATCTCTTTAAGACAAAAGATGACGAAATACTGACACCTGTTTATTAAGTCAGCGAAGACATTGATCTTTTATCTTTCTCTTCCAG
Seq C2 exon
ATGTACCGAAGGGAGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGGAAAAAAAAAAGGAAAAAAAAAGTCAAAAGATTTTTATCAAATATAATGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482:ENSRNOT00000011682:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAAGTGGCCAGCAGC
R:
ACTAAAATAAACCTGTTCAGGGGA
Band lengths:
310-1029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]