HsaINT1028993 @ hg38
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160272151-160275714:-
Coord C1 exon
chr2:160275630-160275714
Coord A exon
chr2:160274765-160275629
Coord C2 exon
chr2:160272151-160274764
Length
865 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CTTTTATTTTTCTCTTCCAGATG
3' ss Score
13.58
Exon sequences
Seq C1 exon
GAGGCAAGTGGTCAACAGCAGGTGGCTGTCGAGACGTCTAATGACCATTCTCCATATACCTTTCAACCTAATAAGTAACTGTGAG
Seq A exon
GTATGAGGGAAAGGTCTTCATAACTGGGGGGCTCAAATCAAGCACAATCTATAGGGCTTTTTTTAAAATCAGAATGGTGATTGGGATAACTCGGATTTTATCATACTGCTTTAATCGTGGCCAAGGCATCTAGTCTTGTTGAAATATTAAAATCAGTGATTTTATGAATTTAAGATTAATCATTTTGTCTAAAGAGAATGCTTTATACTGAAGCCAAATGTATACTCTCCCCACTAAAAAGAAAAAAATAAAAATCTGTAACATCAGAGAACACCAAGAACCAAAATTGTTCTATAATACAAGTATCCTATATCATATTACTTTAATACTCAGAAACTGGAGGACCTATAGCATAAGATGTTGCTCAATCTAGCATTACAAGTTTAGCAACATCTTGATTATGAATTTAGATAAATGTCAATATCCTTAGATTGAAAGATTATATTCCCAACTCTCACTTGAACCACAAATTTCAAAACTTTTCACTTTACCATGCAGACTGTAATAAAATAGCTGTGTAGAACTTAGAATACCCTGGTTTCTGCATTGCCCTGGTGATATAGAATACCTTGGTTTCTGGATTGCCCTGGTGATAACATGTATTTTTGATTTCATAAAGTCACTCTTTAGAGACCCAAATGAATTTGGCTCTAAATTAGAAAAGAAAGTATTTTGCAAGTCCTGGATGTGACAGGCATTGAAAGTAACCATCAGTTCCAGAGTCTGCATTTATCAGTCTACCATCAGTGATGAGCATAACCTTTTTCAAACACATATCTCTTTAAAACAAGAAACAGATTACAAAGCTCTGTAGTGTTTCACACCAAATCTACAAAAGCATTTGTCTTTTATTTTTCTCTTCCAG
Seq C2 exon
ATGTACAGAAAGGTGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCCGAACAGGTTTATTTTAGTAAAAAAAAAAAAACAAAAAACAAAAACAAAAGATTTTTATCAAATGTTATGATGCAAAAAAAGAAAAAGAAAAAAAAAAAGAAAAGAAAACTTCAATTTTCTGGGTATGCACAAAGACCATGAAGACTTATCCAAGTGCATGACCGGATTTTTGTGGTTTTGTTCATTTTGTGTTTAATTTGTGTTTTTTTTTTCCAGCTGTATGAAATGGGCTTTCTGAAGTTTAAATAGTCCGACTTCACCCATGGTGTTCTGTGCTTGCAGTGCGAGTGTTGCTGTAATTCAGTGTTGCCGTCAGTGTCTCTTTTCTTAGCTTTCTGTCTTTCTTTCAACGTAGTGTGAAGTGTCTTATCCTTTTCTATGAATTCCAATTTGCCTTAACTCTTTTGATGCTGTAGCTGTTTCAGTAAAAGTTAGTTCAAACTAATGATGTAGAATGCTTTGACCAAATGAGCTGGTCTATTATGCCTTGTAAAACAGCAGCATAGGGCTTTTAAAAGGTAGTCAATAAAAGTTGCTGAAATTTTGGCTTTTTTAAATATGTAGTAGGTGTTTTTAATGATTTTTCACATAATGTGTAAGGTAGTGAAATGCAAGAAGGGAAAAATGTTTTGTGTGAAACACATTTTCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTGACTGATTTAGGATATCTGCTGTATGATGCAATGTAAAGTCTTTTTTGCCTTTTTTCAGGAAAAAAAAAAAGCTAACTTGATGTACTAGATTTAGTGTAGGTAGTGTTGGGGTTGGGGATGGGGGTGGGGGAGGGGAGTCACTGAATGTTTTGTCCTTCCTTTATACTAATGATAGTGCTTTAGAATGAGAATTATGCCTGAAATCTGGCAAACCGAAAAATGTTGCTATTGCAACAAAGTGGCAAAAGCTAAAAGTAAGGATTTATCTTCAAACATAAGCTGAGATAACGAATAGAAGCAAAACGATTGGCTACTAGCTCTCTCTCTCTCTCTCTATTAGGTAAATTTGAAAAATAAAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCTCCAACTTGTCTCAGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAGAATGTGCCTTTTTTGTACCTTTGCATTTAGGTTTTATAATTTTAATTGATGTATGGACACACACAAACAAAAAAGCATGAAGGAAGATTTGGATCCAAGCAGTGCCACACTTTACATCATCACTACAAGTGTTCAAGTGTAAAGAAAACCAATTTTGAAACTATGAAATTCCTGATTCATAAATACACAGTTATTTCTACTTTAGTACATATAAGATAATTCACTGTTATTAAAGCTCTTTTATTAAGGCAATTGCATATGTTTTAAAAGCAATGGTAAATTAAGTTGTCTTCCAAAACTGTGTACTTGTCTGGTCAGCTGTGTATGATCAGTTATCTACCTCAGAGTCTATTTTCTTTTGTGCTGGGACAGGTTGCTGGCCCTCCCTGTTTCCACAGACCAAATCCTCCTAGCTCAGGAGCTAGGGCTAAGCAGTTATTTCTTTCAAGTATTTTTTAGTTCTTAAATTTTATGCTTGTATTTGATGATAGATGTCAGTGACATTTCATAGTTTCAAAAGTCCTTGCTGCTCTGAGAAGTGTAGATTCTAGTGAAAATTACATAGTCATAAGAGAAATGTGTTTTTGTTTTTGTTTTTGTTTCATTTTTTTAAAGTTGTGGTATTATTGGTTCTATGCTCCCTGGAATATTACTGCTTTGTGAAAGTCCAGACTGAACGCAGCACCCTCTGTGTACCTAGTACAGTTATAAACCTGGGTCTCTCACTACTTGATATTTTTGCATTAGTTAAGACAGAAATTTGATAGCTCGGTTAGAGGGGAGGGGAAATCTGCTGCTAGAAATGTCTGAACTAAGTGCCATACTCGTCTGGGTAAGATTTGGGAAACATAACCTCTGTACATAAAAAAAAAAAAATCAGTTAAACATCACATAGTAGACAGCCATTAAATTATAAAAAAATTAATTTATGAAGAAAGACCTTTTGTACAGATTGAAAAAAAAAGATTTTCATAGAGATATCTATATGATCAAGAGAGTTAATTTTTTATTTTTGTTTTACTAGTGCCACAGACTTGCCAGTGGTAACTTATTTGTCCGGTTCAAGATAACTCTGTAGTTTTCTTTCCTAGGACTTGTTGTTAAACGCCAAAAGACATTTTTGAACTGTACATTTGATCAGATTGTTAGCTTTTCTGTTTTATTTCTTTTGAGAACCTTTGAATAAAAAACATCTGAAATTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250:ENST00000348849:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTCAACCTAATAAGTAACTGTG
R:
TGTGCATACCCAGAAAATTGAAGT
Band lengths:
366-1231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains