BtaINT0123453 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005180 | RBMS1
Description
Bos taurus RNA binding motif, single stranded interacting protein 1 (RBMS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035361]
Coordinates
chr2:36177559-36178719:+
Coord C1 exon
chr2:36177559-36177643
Coord A exon
chr2:36177644-36178494
Coord C2 exon
chr2:36178495-36178719
Length
851 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TTTATATTTTTCTCTTCCAGATG
3' ss Score
12.96
Exon sequences
Seq C1 exon
GAGGCGAGTGGTCAGCAGCAGGTGACTGTGGAGACTTCTAATGACCATTCTCCATATACCTTTCAACCCAATAAGTAACTGTGAG
Seq A exon
GTATGAGGGAACCATGTCCATCACTGTAGGGCTCAAGTCAAGGAAAGGCTGTGATGATTTTCTCAGAATGGTACTTAGAACAACTCAGGTCTGGTCACGCTGCTTCAATCATGGCAAGGGAATCCAGTGTTGCTGAAATCTTAAAATCAGGGATTTTGTGGTCTTGTAAATTAAGTATTCTGTCCAAAAAGAACACAGTGCCTTATATTGACATCAAATGTATGTTTGCTGTCTCTCCCTCCCTATCTGCCTCCAGAATCAGTAACATAATCAGAGAATACCAGGTACCAAATTTGTCCTACATTTTTATATAGATAGATAGATAGATAGATATGTGTGTGTGAGAGAGTATATACCTATATATATATATATATATATATATATATATATATCCTATATTTATATTATTTTAATGCTCACAGACTGAAGGAAAAACAGTGTGAGATTTTGCTTAGTCTAGCATTACAAGACTAGCAGTATCTTGACAGAATCAAATGTGAGCATCCTTAGATTGATAGATTGCTTTCCTTACTCTCACTTGAACCACGTATCTCAAAACTTGTCACTCTGCCATGCAGATTACATTGAACAACTGTGTGGAACATAGAACACTTGGGTTTCTAGATTGCCCTGGTGAAGTATGTTGCAGGTCTGAGATTTGAAAGGTGGACTCGGGACATAGAAAGCGACCCTCAGTTCCAGAACTTGCATTTACTGACCTACCACCAGTGATGAGCAGATCCTTTCTCAAACATATATGTCTTTAAAGCAAGAAAGAACTGACAAAGCTCTGTGGTCTGTTACACCAACAGTTACAAGAGCATTTGTTTTTTTATATTTTTCTCTTCCAG
Seq C2 exon
ATGTACAGAAGGGTGTTCTTACATGAAGAAGGTTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005180:ENSBTAT00000006826:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGAGTGGTCAGCAG
R:
ACTAAAATAAACCTGTTCAGGGGA
Band lengths:
310-1161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]