DreEX0061387 @ danRer10
Exon Skipping
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25832750-25842224:+
Coord C1 exon
chr23:25832750-25832860
Coord A exon
chr23:25836113-25836200
Coord C2 exon
chr23:25841176-25842224
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTAACCTGATGCCACTGCAGGAA
3' ss Score
4.47
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGTACCGTCCTCACACCCTCGGTCGACCACACCATGACCATCCAGCCCACTGCCATAATAGGGCCTCTCACACAGCAGCTCAGCCATCTGACCCTGGGCACCACAGGCACG
Seq A exon
GAAAACAGCGTGCAGCAGCAGCAGGTTGGCATAGAGACGCCCACAGACCACACAACATACTCCTACCAGCATGGCAAATGAAGAGGAG
Seq C2 exon
TACATTCATAGGAATGATGGAGGACTTGGATTTTGAACCCGAAATAAAAAGAAACGAACATTGGAAAAGGAACTGAGAAGCACGTCTCTTTCCAATTTGAAGAAAGCAGACTTTTTTTTTTCTTGGAGAAGACCAACCGATAATGAAGCTAAAGCTATTTTAGTGAGCGAAAGACTTGGATGGAGAAAGCTATGACTACAAGGAGGTTCACAAAAAGCAAAGTAAGCTTTTTTAAACACAAAGACTCACATACATGCACACACACACACACACACACACACACACTCCAACACACCTTGAGAAATATTTTTCAGCAACTTTATTTTCTAAAACATTCTGCAAAGCCAGAATGAATCAACTACGATGTTACAGCACCATGTGTCATTTTAATTTGAATTATTGTTTTTTGTAAAATTCTTTCAAGATTTTGTTGACTGCTTTTGAACTGTCTGCTGCAAACGGAGGAATTTTGTACATAAAACTGTTTTTTGCAAAGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGACCACACCATGACCATC
R:
AGAGACGTGCTTCTCAGTTCCT
Band lengths:
179-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]