BtaEX6022200 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57167137-57168150:-
Coord C1 exon
chr5:57168070-57168150
Coord A exon
chr5:57167571-57167656
Coord C2 exon
chr5:57167137-57167462
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTGCCTGTGGTACAGGAG
3' ss Score
6.09
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TATGTGCCAACAGCTGCAGCTATGCAGGGAGCTTACCTCTCCCAGTACACCCCAGTGCCTTCTTCCAGTGTTTCAGTTGAG
Seq A exon
GAGAGTGGCAGCCAGCAAAGTCAAGTGCCGGTGGATGCACCCTCAGAGCATGGCGTCTACTCTTTCCAATTCAACAAGTAACAGTG
Seq C2 exon
GGTTTCCCTCCCCGTCTTTGTTGAATATAAAAGAATTCTTGGATATGCTGATGCTCCAGACTCCAGAGGGCTGACCAGGAGTACAGCCCTTCTGTGGGCCCAGCTGAGGACTAACACTTGGTCATCGGTTTTCACAGGCCTGGGCCTGGAAAGAGAAATCTGCACCCCCGCCTTCTGCTCTTCCTCCACTCCTGGTGGAGCCTGGGCGGGTGTTGGCTGTCACCGTTTGTGTGTGCTGCAGTCAAGGACATCAACAAAACTTCTTTTCTTTTGTGAAGAAAGTTTGCTGTTTTGCTTTTAACTGCAATATACTCTTATCCTACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830-'28-24,'28-23,29-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.500 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGCCTTCTTCCAGTGTT
R:
AGGCCTGTGAAAACCGATGAC
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]