RnoEX0074754 @ rn6
Exon Skipping
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2554308-2555219:-
Coord C1 exon
chr7:2555139-2555219
Coord A exon
chr7:2554696-2554780
Coord C2 exon
chr7:2554308-2554435
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGGCCATGACACAGGAG
3' ss Score
2.58
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TTCATGCCAGCAGCCGCTGCTATGCAAGGAACTTACATCTCCCAGTACCCAGCTGTGCCTTCTTCCAGTGTTTCTGTTGAG
Seq A exon
GAGAGCAATGGTCAGCAGAGTCAACTGGCAGTGGAGCCCCCCTCAGACCATGGGGTCTATCCTTTCCAGTTCAGCAAGTAGTGAG
Seq C2 exon
GTCCGGACTTAAAGAAGCTTATGCACTCCTCCTTGGGCTGTTTTCCCATTGCTGATGGAACCTGAGGAACCATGTTGTTTTTCGAATGTGCTACTACATTCAAGATCAAAAAGACTTTTTTCTTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076-'30-31,'30-29,31-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.538 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTGCTATGCAAGGAA
R:
TCTTGAATGTAGTAGCACATTCGA
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]