HsaEX0052782 @ hg19
Exon Skipping
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
Coordinates
chr12:56982078-56989980:+
Coord C1 exon
chr12:56982078-56982158
Coord A exon
chr12:56982716-56982802
Coord C2 exon
chr12:56982924-56989980
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTGGCTATGGCACAGGAG
3' ss Score
3.04
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TATATGCCGACGGCTGCAGCTATGCAAGGAGCTTACATCTCCCAGTACACCCCTGTGCCTTCTTCCAGTGTTTCAGTCGAG
Seq A exon
GAGAGCAGCGGCCAACAGAACCAAGTGGCAGTGGACGCACCCTCAGAGCATGGGGTCTATTCTTTCCAGTTCAACAAGTAACAGTGG
Seq C2 exon
GATTCCCCTCCCCATCTTTACTGAATAGAAATGAATTCTTGGAGATACTCATGCTCCCAGATTCCAGAGGGTTAACCAGGAATGGAGACCATCCGTCGGCCCTGCTAAGGACTAACACTTAGCCATCGTTTTTCACAGGCCTGGGCCTGGAAAAAGAAATCTCTACGTTCCTGCCCTTTACTATTGCTGATGGAGCCTGGGGGAACCATCACTTTTTTTGTGTGCTACATTCAAGGAGATCAAAAAAACTTTTCTTCTTTTGCAAAGAAAGCTTTTTGTTTTTAACTGCAACGTACTTTTCCCCTACCTTGAAGAGACATGGTGGTCGCAGCTTCTCATCTATATGAAAAAGTTTTCGATGTATTGGAATTATTTGGGAATGCTTTTAAAACAATTTGTAATTATTTCTTTACAAACCAAAACAGAACAGAAAGGTGTGGTGCTGGAACATCGATGAAGGAGCCCTACTTACTGAGCTTAGTTATGGACTTTTTTGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.500 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACACCCCTGTGCCTTCTT
R:
CCCAGGCCTGTGAAAAACGAT
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)