DreEX0061373 @ danRer10
Exon Skipping
Gene
ENSDARG00000074023 | rbms1a
Description
RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
Coordinates
chr11:10967376-10976702:+
Coord C1 exon
chr11:10967376-10967456
Coord A exon
chr11:10970000-10970081
Coord C2 exon
chr11:10974551-10976702
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTCTCCAATGTTATTTACAGCAG
3' ss Score
6.2
5' ss Seq
ACGGTATTT
5' ss Score
5.46
Exon sequences
Seq C1 exon
TTTATTCCTGCCAACACGGCGATGCCAGGAGCTTACATCCCTCACTACACCCACATTCAGCCCCCTGCCATCCCTCCTGAG
Seq A exon
CAGGAAAGTGGTGTGCAGCCACAAGATGTGTCCTCTTCAGATCCGTCATCGTACCCTTTCCAACCCAACAAGCAATAAAACG
Seq C2 exon
GTTAACCATCTGAGGTTTGCCCCAGACACAGTCTGCTGAGTGTTACTACAGTAGCTTTCTCTTAGAGGAAGTGACATCAGAGAGAAGGTGACGCTCAAGCACGGGTTCCAGAAAATTTGTCCATGATTTAATCATCTTCTAAAAGAAATCAACAAGAAACCTCAGAGAACTCTTGTGCAAACATTTTCTCCAACAAATCAAGACGAGGCAATATGACAGCAACAGTGGACAATGAAGGGGAGCAGAGTTTTATTTTGCTAGAACAGAGAAGATGACAAATTCTTATTTTTTACCAAGAACTATTAACACAGACCATGTCTGTGAGTAAAAGTGAGTGATGATGAGGATGGGATTTCAATGCATGATATTTTTTTTAAGTATGGTTTTTATTACGTTTTTACGGACTGTTTCTCAAACAGACGATAGAAATGCTTTTTTGAACAGGTTGCAGTCGAAATGAAGAGTTTTCTGTTTGCTTTTTGGTCTTCCACTCTTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074023-'19-17,'19-14,20-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGGAGCTTACATCCCT
R:
TTTCTGGAACCCGTGCTTGAG
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]