GgaINT0046289 @ galGal3
Intron Retention
Gene
ENSGALG00000010858 | LRP2
Description
NA
Coordinates
chr7:20231672-20234481:+
Coord C1 exon
chr7:20231672-20231841
Coord A exon
chr7:20231842-20234257
Coord C2 exon
chr7:20234258-20234481
Length
2416 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTATTTGTATTGTTTTCAGGTT
3' ss Score
8.58
Exon sequences
Seq C1 exon
CTGGTGTTGCATCAATCATTTTTTCCAATGGCCGTGATTTACTGATTGGAGATCTTCATGGAAGAAATTTTCGTACTCTGGTACAGTCACAGAATCGTGGAGTTGCAGTTGGAGTGGACTTCCACTTCTACCTGCATAGGATCTTTTGGACTGATACAGTGCAAGATAAG
Seq A exon
GTGAGTCGAAATTACAAGAAGAATAAATTTTTCTGTATGTGGAAGTAGAGAACAGCCGGGGTGGAATGTGTTGATAGGCTTTCATTTTTGAGAGCAAAATTTGGCTGTGCTTTTGTTTTCTGGCAAAAAACCTCCTTGAAAAGTTTTATGTTAATGACTGCATTTTTCAAGCTATACTATTACATTTGACATATTAAACAAAGAATCCTATTGTATGGGAATATCTTGAGCAACTCTTAATTTTATTTGAGACGGAGTCCAAAAAACTAATTAAGAGAAATAGTAGACATTCTTTCAAAACTGAACAAAATTTTCTTGGTAATTTTTTGAAACAAGATCATTTTAAATGTAAAAGCTTTGTGCCTTCCAAGATGATAAAAATCAGATCTCTTTATATGCTTCAAATAGCACTGTAATTGAGCTTAGATAACAAATATTGACAGTGTTTGGTGTAATGAGCCAATGTTCTGTTACTTTTTTTTTTTTGAAGAGGAAATATTTTAGCTTCAAGGTAGAGTAAAATACAGTAATTAACCAAAAAAAACCCGCAAAAAGCACAAGTATCTGGAGATCCTTGAGAAATTTAGACATCACCCTTGTTCATCACCATCTCAAGCATATCTTAGAGAAACAAAAAAATAATGTCAGGTCAAGTGGTAAAACTCTAGAATCCTCATCCTCATGTTGACTGCCAAGAAGCATAAAGGAGAATTCATGGTCTGCCTCCCGCTAACACCATGTGTGGATCAATTTGGTATCACTGTCATTATGAATCTATATTCATAGCTGAAAACTAGCGTTTCCACTCTGGTGCCACATTAGTTCTGTTGGAAAGCTCACTGTGTGGCCTTCAAGTTAAACAAGAGGAGTTGTGCACACAACTTTTGAATTGTTCATAATTCTGGCGTTACCATTTTCGCTGTGTTGAGATCACATTACTGAGAATGCATTGATTGTAACTGTAGTAATTCAGGGTCAAATGTAAACTTTCATGAGACAGGACATTTCTCTCATCTCTGTAGAGGTTACAAACGCAAGGTAATATGTTTTTTTCCCCTGTATACTTCACATGGCAAGGACTGTCTTTTTATCTATCCCTATATAGTTAATCCTAAGTAATTCATTAGGATTAATTAATCTAGTTAAGTCCTAACTAGAATGATCTGAAGTGAACATTGACATTAAGAATATTATCGTGTGATATGTATTTCCACCTTGATGGCTTATATGGTAAGCACTGTTAGGGGATTGTCTTTTTCTTTTTTTCTTTTCAAAGACTAACATGAACTGAAACAGGAAATTGTGGGTTGTATTCAGTGACACCTTTATCTCATTTAGTGTATTGCCTGCTAACCTAATGCCCTAAGCTCTTCCGTATACAAGATTTCCAAAGAATGCTCTATAGGCTGTTACTGGTTTGTTGTTAGTATTATGTAGGCCTGAAGAATACTTTAAATGATACAATCATTTCAGTTGCTATTTTTCTTGCATATACTTACTTGTGGAAATCTGCATATTCATATAGATACATTTCAGACCTCAGGCTGTTGTTTCAAAAAAAGGAGATAATGATTCCTGGCTTTACAAATTACCCTGTGCTAGAATGACATGATTGCTGTATAATAAAAATTACTGAATTTATACTGTTGACTTCATGTAGCTATGAGCTTGTGTGTAAGACAATGATATTTCTTGAGCACGATGCTGTTAAAGTTCGGCTTATATAAAAAAGAAATAGAAGCCTAATTGAATCTTCTCCTTTTTGTCAGGATAGAGAGATTTCCCTTGGTTTCTTCACTTAGCAAAGTATATTTTCCTTGTCATTTCCCTCTGATGGTTGGTACAATAAGGACTCCCCCTTTTGTTTCTGGTCACTGATGAGAGCTTTGCTAAAGCTTGTTCATTTGTTTCAATTCATGGAAATAATAGTTTTTGCTAGATTCCAGGAAAGCCAGATATGTTTTCTTTGTGTATTTTTTAATCCAGCAACTTGCCATGTTTGGTAAAGCATAAGGCTGATTTAGCTTGTTGCTTAATTCATTTTGTTGAAATGCTAGTTGAATATCAAGCTTCCTGACAATAACAACAAGCACGTGCACGCGCGCGCACACTCACACTCACTCACACTCACTCACACTCACTCACACTCACTCACACTCACTCACACTCACTCACACTCACTCACACTCACTCACACACACTCACACACACTCACACACACACACACAAAACAACAAAAACAAAAAACAAAACAAACAAAAAAAAACACCCCCAAAACCCAAAGCTGGACATAGCTTAGTATGTGACTTGGTTAATATCTAATGACCAATCTGTGCTTGGTGTGGTGATAGGTGCCATATGACTCATGATAAACAAAACGTAATGTTAGTATTGGTGTTATTTGTATTGTTTTCAG
Seq C2 exon
GTTTTTTCTATTAATATTGATGGCTCTGATTTCCAAGAAGTTTTAAATGTTTCAGTTGACACTCCTGAAAATCTAGCAGTGGATTGGGTTAACAATAAACTGTATGTGGTTGAGACCAGTGTGAACAGAATAGATATGGTCAACTTGGATGGAACAAACCGTGTCACTCTTATTGCTGAAAATCTGGGAAATCCTAGAGGAATAGCACTCGATCCAACTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858:ENSGALT00000020276:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(26.8=19.3)
A:
NA
C2:
PF0005812=Ldl_recept_b=PD(68.3=37.3),PF0005812=Ldl_recept_b=WD(100=54.7),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]