GgaINT0046407 @ galGal3
Intron Retention
Gene
ENSGALG00000012448 | ORC4
Description
NA
Coordinates
chr7:36195786-36196353:-
Coord C1 exon
chr7:36196278-36196353
Coord A exon
chr7:36195872-36196277
Coord C2 exon
chr7:36195786-36195871
Length
406 bp
Sequences
Splice sites
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
3' ss Seq
AAGTAGTCATTTTCTTTCAGGGC
3' ss Score
5.03
Exon sequences
Seq C1 exon
TTATTAAATCGTGTCTTAAAAGACCTCAGAGAAATGAAACAAGTTAAAGAGAACCTCTTGGAAGTTCATCTGAATG
Seq A exon
GCAAGTAATGCAGCACTCTTCAAATACGTTACATTCAGCTGCTGTGCATTATGTGTACTTCAGGAGAGTTTTAGTTTTGACATTGCAGTCTATTCTTGAATGTGGCTATGCTTGTCTCTTAGCTCCAGAATGTCTTCCTTTGCGTGTACATGTAGATAGCTTGGCTTTCTTTCAGAATGTTAGAAATCGGTTCAGCTGTGGGCAAGTTAGTTGAAGTAACTTTGTATTTGTATTTTCCATATTTGTATATGGAAAATTACCATCTTGTCTGTATTTTTACAACGGCCTACCTTTGTAAGGCTTGAAAGTGAGAGAAGCTTCTGGATATGTTTCCAGTGGCTGTAGGCATGGCTGCTTGGAATGAGGGAGAGCCACCAGTTCTTCACAAGTAGTCATTTTCTTTCAG
Seq C2 exon
GGCTTTTGCAGACAAACGATAAAGTGGCCTTGAAGGAGATCACCAGGCAGTTGCACCTGGAAAATGTCGTTGGGGATAAAGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448:ENSGALT00000020350:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(16.1=100)
A:
NA
C2:
PF131911=AAA_16=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]