BtaINT0105842 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015291 | ORC4
Description
Bos taurus origin recognition complex, subunit 4 (ORC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001046301]
Coordinates
chr2:48344397-48345106:+
Coord C1 exon
chr2:48344397-48344472
Coord A exon
chr2:48344473-48345020
Coord C2 exon
chr2:48345021-48345106
Length
548 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTAAATGGGTTTTATTTCAGGAC
3' ss Score
8.25
Exon sequences
Seq C1 exon
TTAATAAACCATGCTTTGAAAGAACTAATGGAAATAGAAGGAGTGAGTGAAAACATATTACAAGTTCACTTAAATG
Seq A exon
GTAAGTATGTTCTCATTTTGCCATTGGAATGATGTAAGCATATGAGCTTTTTACATTATGAGACTAAATTTACTCATATTTAAAATCTGCATTAATAACTATATTTTAAAAACTAAATCTTTAATGGACTTTTACTTTAGCACACTATGCACAGTATTTTTAGAAATTAAAAAAATTATTAATAAAGGCACATAAGGTCTCTTTTTTTTGTATTTATTTTCTTTTTTTATTATTTATTTATTTTAATTGGAGGCTAATTACAATATTGTAGTGGTTTTGCCATACATTGACATGAATCAGCCATGGGTGTACATGTGTTCTTATCCTTTTTTTAAATAACATTAATTCCAAGGAAGATGGTTCTTTGAGTCTAATGTTTTCACTATTAAATTTTAAAAAGGAAATAATGTAAACTAAAAATTTTTGACTTTTCTTTCTAGTTAAATTTTTTAAAGCATTAAAAAACTTACTTGACTAGAAAATAATCTGCATAGTATCAAATACTTATTTCATTTTTATGACCTACTTTTAAATGGGTTTTATTTCAG
Seq C2 exon
GACTGCTGCAGATCAATGATAAAATTGCCCTAAAGGAAATCACAAGACAGTTAAATCTGGAAAATGTAGTTGGAGATAAAGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015291:ENSBTAT00000020335:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(16.1=100)
A:
NA
C2:
PF131911=AAA_16=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]