HsaINT0118477 @ hg38
Intron Retention
Gene
ENSG00000115947 | ORC4
Description
origin recognition complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr2:147958298-147958866:-
Coord C1 exon
chr2:147958791-147958866
Coord A exon
chr2:147958384-147958790
Coord C2 exon
chr2:147958298-147958383
Length
407 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTAAATGGACTTTATTTTAGGAC
3' ss Score
7.84
Exon sequences
Seq C1 exon
TTAATAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGAAGTGAGTGAAAATGTATTACAAGTTCACTTAAATG
Seq A exon
GTAAGTATGCCATTATTTTGCCATTGGAGATTATGTAAACTTTGTGGGGTTTTTATATGACTTGTATATTTCAAATCCATTTTAATAGTTAGATTTTGAAAACTAGATCCATGTTTTACTTAGCACACCATATGCAGTATTTTTAGAAATTAAAATAATAATAATGAAGGAGTCGCAGAAGGACTCTGGTTTTTGTGGGTTTTTTGGTTTTTTTTTTTTTAATCATTCTAATCCCAAGGAGGATTGTTTTTTGATTCTACCGAATGTCTTTATTGCTAAGTTTTAAGAAGAAAGTGATATGAACTCACAGGCTTTGACTGGGAAGATTTACTTAACTGGAAAACAACCTGCTGTATCAAATACATGTTTAATTTTAATTAAATACTTTTAAATGGACTTTATTTTAG
Seq C2 exon
GACTGCTGCAGATCAATGACAAAATCGCCCTAAAGGAAATCACAAGGCAGTTAAATCTGGAAAATGTAGTTGGAGATAAAGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947:ENST00000392857:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(16.1=100)
A:
NA
C2:
PF131911=AAA_16=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains