BtaEX0025426 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015291 | ORC4
Description
Bos taurus origin recognition complex, subunit 4 (ORC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001046301]
Coordinates
chr2:48334931-48345106:+
Coord C1 exon
chr2:48334931-48335021
Coord A exon
chr2:48344397-48344472
Coord C2 exon
chr2:48345021-48345106
Length
76 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTAATATTATTTAGTTA
3' ss Score
4.87
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ACACTTAATTGAACTGCTAAAAAGAACTGCTATCCATGGAGAAAGTAACTCTATTCTCATTATTGGACCCCGAGGTTCAGGAAAGACCATG
Seq A exon
TTAATAAACCATGCTTTGAAAGAACTAATGGAAATAGAAGGAGTGAGTGAAAACATATTACAAGTTCACTTAAATG
Seq C2 exon
GACTGCTGCAGATCAATGATAAAATTGCCCTAAAGGAAATCACAAGACAGTTAAATCTGGAAAATGTAGTTGGAGATAAAGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015291_MULTIEX1-6/14=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(19.4=100)
A:
PF131911=AAA_16=FE(16.1=100)
C2:
PF131911=AAA_16=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAACTGCTAAAAAGAACTGCT
R:
AACTTTATCTCCAACTACATTTTCCA
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development