GgaEX1041347 @ galGal3
Exon Skipping
Gene
ENSGALG00000012448 | ORC4
Description
NA
Coordinates
chr7:36195786-36197575:-
Coord C1 exon
chr7:36197485-36197575
Coord A exon
chr7:36196278-36196353
Coord C2 exon
chr7:36195786-36195871
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTCTTTTTTCCTAGTTA
3' ss Score
8.89
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GCATCTGCTGGAACTGCTGAAGCAAACTACAGTTTGTGGAGAAAGTAATTCTGCCCTCATTATTGGACCCCGTGGATCAGGAAAGACTGCG
Seq A exon
TTATTAAATCGTGTCTTAAAAGACCTCAGAGAAATGAAACAAGTTAAAGAGAACCTCTTGGAAGTTCATCTGAATG
Seq C2 exon
GGCTTTTGCAGACAAACGATAAAGTGGCCTTGAAGGAGATCACCAGGCAGTTGCACCTGGAAAATGTCGTTGGGGATAAAGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448-'3-9,'3-8,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(19.4=100)
A:
PF131911=AAA_16=FE(16.1=100)
C2:
PF131911=AAA_16=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTACAGTTTGTGGAGAAAGTAAT
R:
AACTTTATCCCCAACGACATTTTCC
Band lengths:
151-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]