MmuEX6101120 @ mm10
Exon Skipping
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48933080-48936862:-
Coord C1 exon
chr2:48936772-48936862
Coord A exon
chr2:48933550-48933622
Coord C2 exon
chr2:48933080-48933165
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTACACATTTTTATATTTAGTTA
3' ss Score
6.18
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCATTTGATTGAGCTACTCAAAAGAACTGCTATCTATGGAGAAAGCAATTCTGTACTCATTGTTGGACCACGAGGATCAGGAAAGACCACA
Seq A exon
TTATTAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGTGAGTGAAAATGTGATACAAGTTCACTTAAATG
Seq C2 exon
GACTCCTGCAGACAAATGAAAAAATTGCTCTGAAAGAGATCACAAGACAATTAAATCTAGACAATGTAGTTGAAGATAAAGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(19.5=100)
A:
PF131911=AAA_16=FE(15.6=100)
C2:
PF131911=AAA_16=FE(18.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCTACTCAAAAGAACTGCT
R:
AATTGTCTTGTGATCTCTTTCAGAGC
Band lengths:
135-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types