GgaEX1041347 @ galGal4
Exon Skipping
Gene
ENSGALG00000012448 | ORC4
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr7:34068183-34069972:-
Coord C1 exon
chr7:34069882-34069972
Coord A exon
chr7:34068675-34068750
Coord C2 exon
chr7:34068183-34068268
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTCTTTTTTCCTAGTTA
3' ss Score
8.89
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GCATCTGCTGGAACTGCTGAAGCAAACTACAGTTTGTGGAGAAAGTAATTCTGCCCTCATTATTGGACCCCGTGGATCAGGAAAGACTGCG
Seq A exon
TTATTAAATCGTGTCTTAAAAGACCTCAGAGAAATGAAACAAGTTAAAGAGAACCTCTTGGAAGTTCATCTGAATG
Seq C2 exon
GGCTTTTGCAGACAAACGATAAAGTGGCCTTGAAGGAGATCACCAGGCAGTTGCACCTGGAAAATGTCGTTGGGGATAAAGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(19.4=100)
A:
PF131911=AAA_16=FE(16.1=100)
C2:
PF131911=AAA_16=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTACAGTTTGTGGAGAAAGTAAT
R:
AACTTTATCCCCAACGACATTTTCC
Band lengths:
151-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]