GgaINT0046629 @ galGal3
Intron Retention
Gene
ENSGALG00000011099 | FAP
Description
NA
Coordinates
chr7:22671502-22675137:+
Coord C1 exon
chr7:22671502-22671601
Coord A exon
chr7:22671602-22675072
Coord C2 exon
chr7:22675073-22675137
Length
3471 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGG
5' ss Score
8.47
3' ss Seq
TTTCTTCTTTAATATCACAGCAT
3' ss Score
6.37
Exon sequences
Seq C1 exon
TCCTATGGTGGATATGTAACTTCTCTGGCACTTGGATCTGGCAGTGGAGTATTTAAATGTGGAATAGCTGTGGCTCCTGTTTCCAGTTGGGAATATTACG
Seq A exon
GTATGGAAACTTGTCATAAAAGCTGACTTGGAAAGAGATGCAGCATTTAATGACTTTCTAAATGAATTCATTGCAAGGGAATGGCAACAAGAAACCTAAAGGCAGAGCAATTACGTAAACATAAAACTCTTAAGACCTTAAGTTTAACATTTTCCTTACTGAAAATAACAGACTGCAATTGACAGTTTGAAACAGATTTTGTCACAATTCCAAATGCACATCTGTAAGTGTAAGGGTGTAAAGCCCTCTTGGTAAACCACCATACTCTGGAGTGATCTCCCTGAAAAAAATCCTGTTAAAATTGTATCACTGAGTTCAGAAACAGCTGAACTGTTTTTCTACCTGTGATATAGTCACAGTACACTCCAACTTCATCTGCAAATGAACTCTGTCAGGAATGACTACCAATGATGATTGCAAAGCTATTTCCAAAAAGCAGAGAAAAAGAGAGGGGCACATTTATGTCTGAATTCCTATTTTTTATTTTTAAGTATTTAGCCTTTAGATTTTTCTTAGCCACATCCCCACTGTTGTTGTGTTATAAGCCATATTTTTCTTAATGTTTATTGACTAAGACTCCAAACTGTTTTGAAGAATCTCTGGGAGTATAATCTCAGGGCCGTACTGTGTGAATAAAGCAGATGCATACTCATACATGCAGACCTGCTAGCTTTTGGCATGGTGTAATGGAACCTTAGTGTAAAAAAGAATCATGCCATGCATGTTTTCAGTGAGCAAAATGTAGCACTTTGAACACATTTACTTAGCATATGGTCGTTTGCTAAGAAGTCTTGGTTATGAGAAAAAATTTTGGTTAAATGGAAAGGATTGCTTCCCTGTCTGCTAGAACAGACATTCCTTGTATTTATGGTGTTTTGCAAACAAAGGGGAAAACATTTGTATGACACAGGAAGCATAGTCTTCATGTTTTCCCTGGCATGAACATTTTTTGAAGACATCTTCGCTCATGATCACAAAATTATTTCTAGAATGCAGGCATTAAGCACTATTTTTGCAAAAGTCTCACTTTAGTTGAGTTTTCAAGGGAGCATTGAAGAATCTTTCTAAAAGCACATTGGAAAATCTAGGCAGGCAAAGATACTCCCAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGTAGAACAAAGTCATTAATCATGAGTTTTGGCAAACAGAACATGTTAATATTTTGGTGAACAATGTTAAGGGCAAAACTACAGGATGCTATGTATCTGAGACTCCAAAGAGAGTCGTAATGTCAGAGGATGTACTGGCTCCTAGAGCTTCTAAATTTAGTCCTGCTTTCTGTTAGATGCATAGATTAGGGTTTGGAGCATATTTTTTTTCTAAAACCTTCCCACTCACCTCCATTTTCTGTCAGAGTTAATACAGCAGCTGAACAATTATAAGGCAAATTGCATCCAGGGACAATGTATAGTTAAAAGCATTAAATATGTGACTGCTTTATTAAAATTCTCAATCTCTCTTTTTTTTTTCTTCAGTAATTGACAAGCTGAATCTTCCACTTAGTCATTGTAACACTATTCTTGCTGACCTCAGTGGACTTGTTGTAGCTATACTGGTAGAAGAGAGTGGAGAATTTGGCTCAAAATGTTGTAGAAATGCCAGCCATTAAAAAGAGTTTATTTTATTGAAAACTCAAGCCCAATATGGTTGTTTGACACTGTGTTGACAACAGATATTGCACATTTTCTGTTTTCATTGAATGATAAAGGATTTTGATAAAAGATAAGCTATTTAGGCTTTTCTGCAATTAGTTTATTAGAAAATATCTATGGGAGACTTACTTCTCTGTTTAGGAAGGCACAAGGAGACTTGGAATGTAATCAGTGTGTATAAATATGTGAAGGGAGGGTGCAAAGAGGATAGGGACAGACTCTTTCCAGTGGTGCCCAGACAAGAGACAATGGGCACAAAGTCAAATGCATGAGGTTCATCTGGAAACACATATTTCCTGTGTGGGTAAAACGCTGGCGCAGGTTGCCAAGGGTGTCTGTGGAGTCTCCCACCTTGAAAATAATCAGAAGCCATCTAGATACGGATAATGTAGTTGTAAACAACCAGCTCTATAAGACCCTGCATGTGCAGGAGGACAGGACCAAACGATCTNNNNNNNNNNCATTTTCTGTTTTCATTGAATGATAAAGGATTTTGATAAAAGATAAGCTATTTAGGCTTTTCTGCAATTAGTTTATTAGAAAATATCTATGGGAGACTTACTTTAGGAAGGCACAAGGAGACTTGGAATGTAATCAGTGTGTATAAATATGTGAAGGGAGGGTGCAAAGAGGATAGGGACAGACTCTTTCCAGTGGTGCCCAGACAAGAGACAATGGGCACAAAGTCAAATGCATGAGGTTCATCTGGAAACACATATTTCCTGTGTGGGTAAAACGCTGGCGCAGGTTGCCAAGGGTGTCTGTGGAGTCTCCCACCTTGAAGATAATCAGAAGCCATCTAGATACGGATAATGTAGTTGTAAACAACCAGCTCTATAAGACCCTGCATGTGCAGGAGGACAGGACCAAACGATCTCCAGAGATTCTTTCTAACCTCAATTTCTTAATAATTACAGTGTCCAGCACGTCTATTACGTGAAAGATGCTAGCTTTTCATCATCAGAAAGCCCTAACTGCGTAAAATAAATAAAATTCTCATAATACTGCAGCTTGACAGCTCAATATTTGCCAGTTACTCTTTCAATGATAGTCATAAATAATGTTCTTGTAGTGACAGCTGTTACATCAGTTTTACACAGATTTTCATAACTGCTTTCAGTTAAATTACAAACATACAGGCAGCTCAAAGGAAGCTGTTCCTGATCGTTTCTTGCTGTTACATACTGTTCAGTTATTCATGCTTGTTTTTATTTTCAAATCCATTAACAACCTTCATTGTAGTTAGACAAAGGAACTGGACTGAGACTGAAAAGCAATTGTGATGTTTTTTCAATGCAAGTCTTTATCTTTTCCCGTTTCCCCCATAAGTATTTCTCATTTCCGATCAGTAGGAAAAAGAAAAAAGAACATTTCTTCCACATTAAGTGTAAATACTCATACACATCCAAGTCTGGAATTCTGCTCTGCATTTTTTTTCCTGACAGTAGTCTCTTTCCACCACACTGAAATTATTCTACAACATGACTCATTCAACTGACTTCAGGAGTTCAAACCAGTAGCATAAAGTAGCATCAGTTAATTATATTTATCCACAAAATCTTGTTTCTGCAGATGAGTATCAAACCACTATTTCTGCAAGAACTGTTAGGAGGAGATGTATTAACTATCCTTCATATTTTTGAATATGTTTAGATTTGTTGTGTTATGAGGAAATCAAGCAGAACAGATATAGTTAACATAAACATTAAATTTTCTATGCGTCACTGGAGGCACAATCTGCATTCTTTATCTATAGCTTTTTTCTTCTTTAATATCACAG
Seq C2 exon
CATCTATCTACACAGAACGATTTATGGGTCTTCCTGTAGAGTCCGATAATCTTGAGCACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099:ENSGALT00000018083:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(15.9=100)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]