MmuINT0062449 @ mm10
Intron Retention
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62503365-62504605:-
Coord C1 exon
chr2:62504506-62504605
Coord A exon
chr2:62503430-62504505
Coord C2 exon
chr2:62503365-62503429
Length
1076 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGG
5' ss Score
8.47
3' ss Seq
GTTCCTGTGTATTTTTACAGCAT
3' ss Score
7.99
Exon sequences
Seq C1 exon
TCCTACGGAGGTTATGTTTCATCCCTGGCCCTTGCATCTGGAACTGGTCTTTTCAAATGTGGCATAGCAGTGGCTCCAGTCTCCAGCTGGGAATATTACG
Seq A exon
GTATGGAAACATTTCATAAACGCTGCCGTGAAAACATTTAACACATAATTACTCTATATCTGAGGTTGCTAGGAAAGCAAACTATGCAGTAAGGTCTACCTCAGCATCACTGGGGAAAATATAATCTATAAATGAGGTTGTTCATATAACTCATTACTATCATGCTTTAACTTCCAGTGGTTAAAAAGAGAAAGAACTCTTCACAGATCCTATATTTTTATTTTCTCCCACAAACTTTGATCTCTTGTGGAAAAAAAATCTTTAACATCAGAGCTAACTCTGTTTTTGAAGGCACATAACTCCAGCAATGATTACTTTTAAGCATATGTTTTGCAAAGTCAAGGGCCAAGGAATGAATTATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATATATAAATTGGGAGCTAACTATTCCCGTGAGTGCCTGTTTTCTTTATTAACCCCAATATAAAATGCTTATTTAAAAGTAATTCTAATAATTGTGCAAAAACAAATATAGCTTTTGCTATTTTCTCTTTTCCACACTGGAGTAAAAATGAGAGACATTCATGCCTTACAGAGAATCTTTATTCAGAAAGGTATATGACTGTGTGTTTGAATTTGTGTCTATGGTGTTGAGGCAAGTAAGTCTGGGAGACACATTTTCATCCCAGATGAAACAAGACACTAGTGAAGAGACCAGAGGAGGTGGATTTTGCAGTTTATTTTCAAATATAATGAGGCCCTTCCTATCTCCACATTCCTCCAAGGAGAGCAACTGAAAAGAGCTTAAAAGCAGCCTGTGAAAAAGAATCACTTAGCCACTCGTGTTTCCATAAAGTCTCTGCATTGTTTCTGGAACCTCACTGAGGTGAGCTGCAGAAATGACATATTCATTGAGATGTACCATGACACCAAGTAAAACAGGAGTGTACCTCAGAGTCTTCCCACGGGAGAACTGGGGCACACTTACTATTGTAGGAGTTATGTAAGATCGAGAAATGGCATGTATAAAATGGAAATAGCATGTTCCTGTGTATTTTTACAG
Seq C2 exon
CATCTATCTACTCAGAGAGATTCATGGGCCTCCCAACAAAGGACGACAATCTCGAACACTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392:ENSMUST00000102732:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(15.9=100)
A:
NA
C2:
PF0032616=Peptidase_S9=PU(40.4=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types