HsaINT0061958 @ hg19
Intron Retention
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein, alpha [Source:HGNC Symbol;Acc:3590]
Coordinates
chr2:163030233-163031476:-
Coord C1 exon
chr2:163031377-163031476
Coord A exon
chr2:163030298-163031376
Coord C2 exon
chr2:163030233-163030297
Length
1079 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGG
5' ss Score
8.47
3' ss Seq
TATTCTCATATATTTTATAGCGT
3' ss Score
7.16
Exon sequences
Seq C1 exon
TCCTATGGAGGATACGTTTCATCACTGGCCCTTGCATCTGGAACTGGTCTTTTCAAATGTGGTATAGCAGTGGCTCCAGTCTCCAGCTGGGAATATTACG
Seq A exon
GTATGGAAACATTCATTAATGTTACTGTGAAAGCATTTAACACGTAATTACTCTATATCTGATGTTGCTAGAAAAATGGATTATGCAGTAAAATTCACCCCAGCATCACTGGGGAAAATATAATTTATAAACAAAGTTGTTTATATCATTTATTATAAACATGTTGTAACAATCAATGAAATCTCAAGAGTGAGGAAAGGCTCATCCATAATCCACTATATCTTATTTTCTCCCAGAAACCTTGAGCCCCTGCCGAACCAAATCTTTAAAATCAGAGCTAACTCTGTTTTTGCAGGCACACAGCTACAGCATAATTGGCTTTTAAGCACATCTTCAGCACGGTCAGGCCAGAGGCCAAGCAGTTCACCTCCACGCCACAGTTAGCAATTGCCAGTTCCATTGCTCCAGAAATCAAAGAAACAAAAACTTTGTTGGAGAAATACTCCTGTTTGTGCCTATTTTTATCATTACATCAATGCAGGATGATTATTTGGAAGGAATTCTAATAATTATACAAAATAACTCTAATAATTTTACAAAAATTAGCTTCATCAGATTCTCTCCTCTATATTGGGGCAGAAATAAAACAATTGTGACTTGTAGGGGATCTTGATTAAGAAAAAAAGTGTGTGCATCTATGTACGTGTGTAGGGGGAATAGATTTGAGGGACATATTTTCATCCCAGATGAAATAAGACACCAGTAAAAGTCCTAAAGATGGCTGGATTTGTGATTTTCTTTAAAATATATTGAGACCATTCTACAGGTCATTCCTACTTCAACATTCTTCCCTAGGAGGGTAGAAGTGAAAAATATTAAGAATAGTCATAGAAAGAAAATGTTTAGATGCTCCTGTTTCCATAATCTCTTCCTTCATACTTCTCTAGCTCTATTGAGGCTAATTGCAGAGATGACACATATTCTTTGAGGCCAACCATTATAGCAAAGTAAAGCAAGAATTTACCTCAAGAGCTCAAGATGGGAAAATTGAGAAACAGTTATTAAACTAGAAGGTCTTGTTGGTTAATGAAATGACATTCATCACATGCAAACAATGCATATTCTCATATATTTTATAG
Seq C2 exon
CGTCTGTCTACACAGAGAGATTCATGGGTCTCCCAACAAAGGATGATAATCTTGAGCACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098-FAP:NM_004460:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(15.9=100)
A:
NA
C2:
PF0032616=Peptidase_S9=PU(40.4=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)