GgaINT0046794 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:19999751-20000333:-
Coord C1 exon
chr7:20000308-20000333
Coord A exon
chr7:19999830-20000307
Coord C2 exon
chr7:19999751-19999829
Length
478 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
GTAGAGTAATGAAACTGCAGGTA
3' ss Score
-2.45
Exon sequences
Seq C1 exon
TTTTTTATTTTATTTTCCTCGAACAG
Seq A exon
GCAAGCCTTTCTGAAATTCACAGCAACATGTGGGTTAGAAATGGCCTGCAAATTAAAGGACAGGCCATGACTTATGTGCAGTCTCATTTCTGCAATTCAATGATTGATCCTGACATTTACCTACTGCAAGTAAGTTAAGTTTTCTGAAAAGATAAGCCAGTGTCTGAAAATAAACTACTGAATAAAATGAATTTGTTCTCTTTCCACAGGTCTGTGCCTCTAGGCTTGACCCAGATTATTTTATTTCATCAGTTTTTGAAAGGTAGGATAGGAAAACAAAAGGCTCATGTTGAATATTTTATTAACTGTTGACTAACTTATGTTATGTGAGAGAAAAGATACGTATCAGATGTTGTGGAACAACTTTGCCTAGCCAAAGCTAATACTTATGTAAGGCACCTGGCGAAAGAGTTACCTCACATCTCTGATCTTTTTACATGGTTGGCTTTTGATTTACAGTAGAGTAATGAAACTGCAG
Seq C2 exon
GTATTTTATTTTGGAATGTCTTCAGGGTGTGAGGGTTTTTTTGCTGGTGATGTGTGGTTATTTTTTTTCTTTTATGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009671:ENSGALT00000038533:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]