HsaINT0176807 @ hg38
Intron Retention
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:169924084-169925747:+
Coord C1 exon
chr2:169924084-169924173
Coord A exon
chr2:169924174-169925618
Coord C2 exon
chr2:169925619-169925747
Length
1445 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
GTCCAATTTACTTTTATTAGGCA
3' ss Score
4.1
Exon sequences
Seq C1 exon
GCTGTGAAATGTCAAGAACTAGATTTGGATTCTGTTTTACCAGATCAGGAAATGTTAATGAAACTAATGATTCACCCACTCCAAATTCAA
Seq A exon
GTATGTATTCAGGCATTTAAAAAGTTTTGAAGTGGATTCCTTGTTTAAGTGATTCTTCCTTTATTTATATGCCTTTCATTGTTATTATAGCTGAGATGTTTGAAAACTTTTTTTAAAAAGTTGTTATTGTATTTTTGCTAGATTATGTTTAGGTATTTTTCATTTTATGAGATTTACTTTTTAGTTTTACTTTTTCCAGGAATTCTTTTCATGATATTTGCTTATGGGGTGGTATTTAACATACTATATAGCACTGTTTTGGGAGTCAGGAGATCCAAAAGATTCTAGCCTTGGTGCTACCACTGTTTTATTTTCCGCAAGGTTTAAGGTAATTCACCTCCTTGATTCTCAGTTTCCCTATCTGTATAGTGAGAGGAGAAAGAGGAGAGAAGAATTAGCTTATATAAGCACTGTGATTTCTTTTAATACCAGCAATGTAATTTGACAGGCCAGCTTTTTATATACATTAGAGGGACTTGCACTTCCATTTGTTTTTCCTGGCAATTTTAGATTTGTTAATTATTATAATATTGAACTTGAACTCTGGGTGTTAGGAAACATAAAATTATGACTGCTTGAAGCCAGGTGTGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACGAGGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCTTGTCTCTACTGAATATACAAAAATTAGCTGGGCATGGTGGCGTGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAAGAATTGCTTGAACCTGGGAGACAGAGGTTGCAGTGGGCCAAGATCGCGCCACTGCACTCCAGTCTGGCGACAGAGTGAGATTCTGTTTCAAAAAAAACAAAAAAAATGATGACTGCCTAGTTTTAGTTGACACTGGACATAAATACATGAAGAATTAAATACTGATGTAGTGAGAACATTTATTCTAACCTCCAATATTTGGAAAATTAGCAGTATAGATTTAAGATTGAGTTAGGGTGAATTAAAGATGTAGAATGTATTCATTGACTTTGAACAGTTGGTTTTATTTTATGCTTATTCTAGTGTCTTTCTTTAAACATGTATATTAGGATTGTTGTTGTTGTTACTTAGGGTTTTCTTGAGGGAGAAATAGAGTGAAACATAAGCATTGATTTCTTATGAAAGATGTCAGTGAAAATCATCATAAATGTATCCAGAGGCCAACATGGAAAACCAACTCATTTGTTTAAACTCTAAAAAAGTGGCTATGTAAAAACATAATTATTGTTAAAAAAAATGTAAAAATGTATATTTCAACTGATTATCTTTAACATTGGACAGAATATCGGGCTTATACTATGATCACATCATTAAATATTTTGAAATGGTTATTTATAATATTTTGTAAAGATTGCATTTAGATAATTTATTCTTTGTCCAATTTACTTTTATTAG
Seq C2 exon
GCAAGTCTTGCAGAAATCCACAGCAATATGTGGGTAAGAAATGGTCTGCAAATCAAAGGACAAGCCATGACGTATGTCCAGTCTCATTTCTGTAATTCCATGATTGATCCTGACATTTACCTGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357:ENST00000272793:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAAATGTCAAGAACTAGAT
R:
ACAGGTAAATGTCAGGATCAATCA
Band lengths:
214-1659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains