GgaINT0046792 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:20000571-20001108:-
Coord C1 exon
chr7:20001019-20001108
Coord A exon
chr7:20000589-20001018
Coord C2 exon
chr7:20000571-20000588
Length
430 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTCACAAATATTTTTATTTATA
3' ss Score
-10.45
Exon sequences
Seq C1 exon
GCTGTCAAGTGCCAAGAACTAGATCTGGATACTATCTTGCCAGATCAGGAGATGCTGATGAAACTAATGATTCATCCACTTCAGATCCAG
Seq A exon
GTATGTACCCAGACTTCTGTGTTTGATGCAGAGGCAGAAATGCGCAATAAAAACTTGTCTGATTGTTTTAGCTCCAGTAATTTGAATATACATAGAAGTATTTTACAAGGAAGAATATGATTTGTAGAATATCAGAATAGTATAATTAATAGAATATATTTAATAGTTAGGATGATTTTTTTTCCCCTCCTGTTTCCATAATCAAATGTGTCATTGGTTAGCAATACAACTTGGGTAAGTATGATAATAATAGTCACTATAGCACTTTCAAAAAGAATAGCAGGATGGCCAGATTTGAATGCAGAAGTTTCTTCATGAAGTAATTACTAATGGAGTACAAGTTGAAAAAAGAAACAACAATCTGAAAATTCAAAATTTTAAATTGAGAATGAATTCAAAAGTAGATGCAGTTTCACAAATATTTTTATTT
Seq C2 exon
ATAAAGTTGTATTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009671:ENSGALT00000038533:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]