GgaINT0047325 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18735258-18740435:-
Coord C1 exon
chr7:18740405-18740435
Coord A exon
chr7:18735448-18740404
Coord C2 exon
chr7:18735258-18735447
Length
4957 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TACAGCTTTTCTCCTTGCAGGTT
3' ss Score
10.86
Exon sequences
Seq C1 exon
GTCGGCCGCCAGCCCGGAGTCCTCAGGAAAG
Seq A exon
GTGAGGAGGGATGGGAGGGCTGCCGGGACAAGTTCGGAGAGTGCTCGGGGAGCGCTGCGCGGGGCCGCGTGTCCCGACATGTCGCGGACGGAGGGAGGGAAGGAGGGAGAGACGCGGTTCGTTCGCGTTTCGCGCGCCCGCTCGCCGCGTCGTTGTGTGCTGCGGTCGTAAGGTCCCTCAGGCTGGACTTTAAGGTGCGACGTCCTTCTCTACCCTTTTCCCTTTCTTTTTATTTTCTTCTTTCCCACTCATTTCTCTCCGTCCTCTCCCCCACTTCGCGGCGCCTGCCCAAGTTGGCCGCTGCCCGCGCACACGTGAGCGGCGCTCCGCCGTGCGGCGCTGCGCCTCGAGGTCCCGCGCCGTGCGCCGCTCCCCCTGCCGAGTCCGGGGGCAGAGGGATTGAGAAGCGCCGGGTCCGCGGGGTCACCGCCTGAGAACATCGCAGCTTTCTGCTGGAGGCGCGCGGTTCAGCGTTGTCGGGACTTTGCCCTTGAAGCCCTCGAAAGCCGGCCTGCGTTACCTGCCGGGAGCGAGCCCGGCGTGCGGGCGGCACGGTGCGAGCGATGGCGGTGCCGGGTTAGCCGCAGGGACGGCACCGGGCCAGAGCTCCAGCCTGTGCCCTACAGCCCTGTGCGGTGCTGGCGGCGGCCCCGCACGCCCCGCGCAGGTGCGGCCGTGCTGCTGCCATCGGTGTGGGGTGGCAGGGCGAGCCCTTCGGGTTGGGCAGAGTGTGACGGTGTCTGCTGCTCGTGTGGCGCCGGGTGAGGATAGAGCGGTTTGTTTTCTGAAGTACTCAACTTACTTCATCTGAGCTTTTTCCTTTTCTGTAGTGCCAGAGTCTGTATTAATTCAAATGAAATTAGAAACGTTATTAATGGATGTTGGGCAAAATTCCTGTCCTCTGACACAGGGCTTGCGCGGGTGCTGCTGCTCGTGTAACCAAAGCACTGCCCGGAGTGCTGACACCTGCACTGCTGCTGCTGGGTCTGGCTGGGGGAGGTTGGGAGGTGCAGGGGCTGCTGGTGTTACTGTAACTTTGGATATGGAGGTGTGCGTGGAGTGTGTTTGCAGCTGAGCCATCAGCAGTCCACAACGTGATTAAAGGGTCTCTCACAGAAACTCTTTCTGCACTACCTCTTGTAGCTCAGTATTGCTACAGCTCCTTCTCTGCTTTCTGCTGACATTAAGTGGCAGGTAACCGTACTTCACGACATCTTTGTTTTTGCATTTGTATGGTTTTCTGTTTTTTCTTCCCTTTTTTTTTTTTTTTTTTTTAAACTCCAAATAAAGCTGTAGCTGCAGCAGCCCAGGTTGGTGTCTCCGTGGCCTGCAGGCCCTGGTGGATACAAAGGATGACTGAGATCTAAAAATGGGTGGTCAAAGATCCTGGAAGCAAAAGGGCTGTTTTGCCAAATAAGGAAACTTGGCACATTCTGCTGTGTATTTTAAGATAGCACAAGTGTAGTGTGCTACTACTTTATTGGCAATTTGTTGGCAGGATGCCTTCCCAAAAGAAGCACTGAATCTGGCTTTGAGGAGCCATACGCTGAGGAGAGGGAGCGAATTACAGAGGGGTTTCCTTGCGTAGATATAAAGGTGGTGGTTGCGTTTTGGTTTGGGGAATTTTTTTGTGTGTGTTTCGGAGCAGTCAAATATCTGAAGCATCCAAGGTATATGTGCAAGTCGTGAGATGCAGTTTAAAGTCTGCAGACACGTGCTGAGCCACAGTCAACTTGTGTTGGACTCTCCCTTTCTGCTGCTCGTGGCTCGCAGGCCACGAAGGGGAACCTGTCAGTGCCGGGGAGCAGCAGTGATGAACAGCAGGGCCCTGGCTCTGCGCGAGGAATGAGGCAGTGTGCTGCTCCCTGGCCGTCCCCCCGCTGCTCACCCCCTTCTGAGGCACAGGAGGGAGCGCCGGTGGCCATGCTGGGTTTTTCCTATTTCGGTACTCTGAGATGCATGCAGTGCTCCCCCAAAATGCTTACTGCCAAAAACCAGCCCCAGGCCTGGAAGCCGGTGGCAGGGCTGTTCTCCTGGCCTGGAAACGTGTGGTCTGCAAACATGCTGCGCGTGGGTGGAGTGATGCACTCACTTTGGATAGACATAAGAATCTGGAGTTTAAGGAAATACCAGTTATTTCTCTTAACCAATGGTGTAAACTCAGATTGTTAAGTATCTTTTAGAACAGGCTGACAAGTTAATAACTGTGTGTGTAATTGTCACATGCAGCTGTTGCTCTAAACAGTTGTTTTCTCTAACATAACAAAGGGATCGATCTGTCTAATTGAGGATTAACTGCCTTGCATCCAGAAACACGGGGTAATATTGAAACAGGTTTGTTCTTTCATCTAGAAGAAAACTGTGCGCCTACCTTAGACTGTCATTAATTATAGATCTCTAAATGAAGGATGTCCCAGCTATGGCTCTTCCACTTTCTCTGGAAAAAAACATGCTGGGAAACCTAATAAAAACCCACAAATTGTTCTTTAAATTGAATTACTTTATTGTGTGCTGGTGACTGTAGCATCGGCAGCTGACTGTTGTAGATAAATCTGAAAAGGTGCTAAAGATGAACAGTAGCTTCTGGAAATGCTCGTGTGCTGGGCACCACGTTGTCATGGCAGAAAGGTTTGGGAATTGGTGGACTTCTAAGCAGCAGGGAGGATGCACAGGTGGGTGCTGACTTGTATTTAACAAATGTCTGTTGTGGATGTTGTTGCATATTAGTAAATGTTGAGTCTGTTCTTCAGTGAAATCTTAGAATAACAGCTTGTTCTAACTTTAAGAAGTCAAATCATTTAATTAAATAGATAATTTTTTTTTTTTTTGATGGAGAGTAATTTAAAATACTTGACAGCTTTTCAGAGTTATCAGATTCCTACAGTAAAGGCCAGAAGTGTTTGTTTCCTTTGATGCATATTTCTTTTCACTTGGCCTTCTGCTCCTCCTGCCATCTCCAGCACGACCACCTGCTGTCAGCTGCTAGCACTGTTCAGTGCATGGTCCCAGTGTGGTGCATAAGCTTTTCCCTGTGAGTGGTGTTACCCTTCTGAGTAATTCTGCTGTCAGCAGGGAGGTTGTTCTCTTCACCGTTGTTACCCACCTGCATCAGTGAGTGCAGGGCCACGCCTTAAGTTGTTCAGATTGGGAAGTTCACCTGTTTGATTTGCCTGCAAGGTGCTATATATTCTGAGGCATGTGTGCATAGTGTTGGTGTGGGGGAACGGCTGAATTAGAAATGACAAATGGGCTTTTGTTTCTGAAGAGTGGGTAATTAAGCAGCACTGACAAAGAAGCAAAAAGTCAGAGCTGCCTTCCTTATGCTCCTGATTTGCAGCAGTGACCGTTTTCCTTCCCCTTGAGCTCTTCTTCAGAATAAGTGTGTGCTTGGGCAGTGCAGAAGATGACCCTGATCTTCCATGGCAGTACAGGAGATGAAAGGAAATCCAGCGACAACACAGCAAGTTTAAAACAAGAACGGAAGGTCAGCAGAAGGGTCCAGGCACTTGTACCAGCAGAGGAGCTGACAGATATTGGAAGAGCAGCCTTCATTTCCTACTGCAGGGATTGCTGCAGCCAGCACCAGGCCTGCTGCGAGCTCCTTGTCACAGCCCAGCAGCTGCTGCCTCCAGCCTTGTGGGTAGGGAGGAGATTTACAGCACGCCAGGCAGCTCCAGAAAAGACCGTATGCTCTTTTATTCAACGTGGAAAAAAAATCTGAGTATCTTCATGGCTTGTTTGGACAGAGTGACAAATTTATGGTCAGATGATACCTCAAATTGTTAGTCAACTTAGCACACGTTCTGGAGAGCTGGGAGGGGAAAACTGTGTCTTTGTGTTGCAGAAGGGCTGTTGGTTGTGTGGCGGGCGGAGGTAGGTGATACATGAAGCGTGCAGCTCCCAGCCCCTGACAGCCCATGAAGCCTGGTGCCAACCCTGGGAGCCTCTGGCCTGCAGGGCTTTTTTGGCACCGAGTGGATAGATGGATATAACTGCAGATGTGGTTTTCACCAGCAAAACAAAACCTCTGTTTGTTTGCTGTATTCAGACCCATCTCTCCTTCATTGGATCCTGTATGCTCACTCTTCTTGCTTGCCTGTGCAGTAACTTGGTGAAGATTCAGGCAGGTTTGTGGAAGCAGGTGAAGATTTCTCCTATAGCCTTGTGGTTCTCGTTCTGTAGGGTTCTGTAGGACCCTGCCTGCTCTGCTTTCTTCTGGAGACCCATCCTGATCCATGACCAGTGAAAAAGGAACCTAAAATTAGATGCTGTCCACTCACTTAGATGTTAGCGTTGCTTGAAGTCTGCAGCAGGCACGTGGCTTACTTATTGCTTTGAGATCTATGAGAAGGACGTTCTGTTCTCCTGGCAGCCAAAATGGATCGTCTCTCAAAACTGCCGAAGCCGGTCTTGGCACATGCTGCACGATTTCGCATATTGTAGCTTAGATAAATTACCGTGAGCTCGCGCTGCTCTGTAACGTGCACAGAACTGACTCACTTGGAAGGAGACAGTTGTTGTGGCCGGGCTTTTGGGTGTCCCAGCATAGAGCTCGTACCTGGCGGCAGCGTGCACGCCATGCACTGTGCGTGTGCTCGGCGTGCCCGAGCTGCTATGTGAGCTGGGAGCTGAAAGCACGGCTCCGTTCGCCAGCAGGCTCGGTGCTGGCAACGCGGGGACACGTGCGCTTTCTGCGCGGCTCCTTCCAAGGTGCTCGTGAGGAGTATTTTTAGTCCCTTCTGTCTCCCAGCTGTTCCTAGTAGCTTGTGCAAATAATGTAAACATTTGCACAGCCTGTTGGGCGGCGAGCTCGTAGGCTTTTTCTTCTTATGCTCAGTAGATTTTTGCTGCAGCGTGCTTGCCGCAACAGGTTCTTGGCTTGGGGTGTCTGAACCTAGGTAAGAATGTCCATAAATCTGTGCTGAGTGTGTACTGATTACAGCTTTTCTCCTTGCAG
Seq C2 exon
GTTTCGCTGTGGTATATTTTGTCATTATGAGATGTCGTCTACCAGTGCTTCATTTGTGCAAATTAGATTTGATGACTTGCAGTTTTTTGAAAACTGCGGCGGAGGGAGTTTTGGGAGCGTCTATCGAGCCCGATGGATTTCTCAGGACAAGGAGGTGGCTGTGAAGAAGCTGCTCAAAATAGAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344:ENSGALT00000015215:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0771412=Pkinase_Tyr=PU(15.1=69.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]