GgaINT0047490 @ galGal3
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
NA
Coordinates
chr7:24091130-24091490:-
Coord C1 exon
chr7:24091390-24091490
Coord A exon
chr7:24091268-24091389
Coord C2 exon
chr7:24091130-24091267
Length
122 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
GTGTGACACCATCCCACCAGGTC
3' ss Score
6.92
Exon sequences
Seq C1 exon
CTAAGGTGGAACAGGTGAAGTTTGACGCCACCACAATGCATGTCAAGCCTGAAGTGGCCGCCCAGCAGAAGATGGTGGATGATGGATCTGGGGAGGCAGAG
Seq A exon
GTAGGCTGTGGGAAGGATGCGGGATGCATCCGTGGGATGCGTTGGGAGACGCCATGGGAGTGCAGGTGCTGTGGGGCCAGGGATGCGCCAGCCCTGGCAGCAGTGTGACACCATCCCACCAG
Seq C2 exon
GTCTGGCGGGTGGAGAACCAGGAGCTGGTGCCCGTGGAGAAGCGGTGGTTGGGCCATTTCTACGGCGGGGACTGCTACCTGGTGCTCTACACCTACTACGTGGGGCCCAAGGTGAACCGCATCATCTACATCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(51.9=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAACAGGTGAAGTTTGAC
R:
GCCAGATGTAGATGATGCGGT
Band lengths:
234-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]