DreINT0036221 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:212740-213273:-
Coord C1 exon
chr11:213173-213273
Coord A exon
chr11:212878-213172
Coord C2 exon
chr11:212740-212877
Length
295 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CACTGTCTCTTCATGTGCAGGTG
3' ss Score
10.4
Exon sequences
Seq C1 exon
CTGATGTTCCTCAGGAGAAGTTTGATGCCAGCCGGATGCACATGATGCCGGAGGTGGCGGCGCAGGAGCGCATGGTGGACGACGGCAGCGGGGAGAAACAG
Seq A exon
GTGAGAGAGAGACAGAGTGTGCTGAAATCAGTTGTAAACACTTTCAGAACTCTGCTCACGTAGGGATCAAATATTATGCTGACCTTGAACATTTTTAATATTCAGTAACTGGTGGTGGCTGCTTCCTCTGTGTCATTAATGTATCGTATCATTGGCCCCCGCATTCAGCAGCTCATGGTATCATCCTCAGCTAGTGCACATGCTTAGAAAAGTGTGTACCGATGACATGTGTGACTTTAGAGACGGTTCCTAAAAGTGTGAATATGGATCATCCACACTGTCTCTTCATGTGCAG
Seq C2 exon
GTGTGGCGTATCGAGAACCTGGAGCTGGCGGAGGTCAGCAAAGCTACACACGGGTTTTTCTATGGAGGAGACTGCTATCTGATTCTCTACAGCTACGAGGTCAACGGCAGGAAAAACTACATCCTCTACATGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCCTCAGGAGAAGTTTGATGC
R:
CCTCCACATGTAGAGGATGTAGT
Band lengths:
236-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]