BtaINT0024422 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55992260-55992985:+
Coord C1 exon
chr5:55992260-55992360
Coord A exon
chr5:55992361-55992847
Coord C2 exon
chr5:55992848-55992985
Length
487 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
TGTGTCTCTTCTATGCCCAGGTC
3' ss Score
9.26
Exon sequences
Seq C1 exon
CGAAGGTTTTCCAGGATAAATTTGATGTAACTCTGCTGCACACCAAACCAGAGGTGGCAGCCCAGGAAAGAATGGTGGATGACGGCAACGGCAAAGTTGAG
Seq A exon
GTAATAAGCCCAGTGACCCATGTGCCAGGGCAGGCAGGGCACCGGTCTCCTGGCTGCTTTGCTGCAGAGGAGCGCACAGGATCCTGTGTCTCCTCTGTTTCCCTTGTCATCTCTGGGGCCTCGGGACTCTTCCCTAAGAGGTGTCTGCATCTTCAGGGTTCTCCCACAATTCTTCAGGGAAGGGAAAGGTAGGCATCCCAGTGTGCTGTCAACAGCTCACCTGGCAGACGCATTCAAATGACCTCTGAGCTGTGATGGGGGTGCGCCTGACCAGGGATGACCTACTTCTCCGGATTCAAATCATGCAAATGGGATAAGCCCTCAGTACTGGGAAGAAGCACCAGAGGATAAGGGGTACTGTGAATGGACCTTTGTGCCTCATCCCACCTGGATTCTCTGCTCAGCATGGCCCAGTTCCCTCCAGGTGGCTGTTTGTTCAAAGAGGACTCCCCCCATCTCTGGGGAACTGTGTCTCTTCTATGCCCAG
Seq C2 exon
GTCTGGAGGATAGAAAACCTGGAGCTGGTCCCCGTGGAGCACCAGTGGTATGGCTTCTTTTATGGGGGAGACTGCTATCTGGTTCTCTATACGTACGAGATGCATGGGAAGCCTCATTACATCCTGTATATCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGTTTTCCAGGATAAATTTGA
R:
TGCCAGATATACAGGATGTAATGAGG
Band lengths:
238-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]