RnoINT0024203 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70301019-70301697:+
Coord C1 exon
chr7:70301019-70301119
Coord A exon
chr7:70301120-70301559
Coord C2 exon
chr7:70301560-70301697
Length
440 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTGTCTTCTCTTGTACCCAGGTC
3' ss Score
9.96
Exon sequences
Seq C1 exon
CTAAAATCTTCCAGGACAAGTTCGACGTGACTCTGCTACACACTAAGCCAGAAGTGGCTGCTCAGGAAAGAATGGTGGACGACGGCAACGGCAAGGTTGAG
Seq A exon
GTGAGCCCAGAGAGGGCCGCACTGGGCCTCTGGGATCTTCCTGCTGCAGAGGAAGGCAGCCCATTCTGTATGCTTCTGTCCCCACTCCACATTTCCGTACTGTCCAAGAGGTGTGGGGCTGGCTGTTTACCCACAATGCTTCAGGAAAGTGAGAGACGCTTTCCCCAATGGTCTATCACCTGGAAGACATGTTCAAGCTGTCTGTGAAGAACTCGGCTGCTTGACAGGAGCTGTGTGACCTGGGACTGTTCTTGGGATTCAAGTCTTGCAAATGTGACGGCCTTTGAGGCACAGAGGACCCAGGCAGGAGGGGCACTTGAGATAGATGTTAGTGCTTTTTTCCCACTTGGAGTCTGTTCAACACTGCCCAGTTCCCTTCCGGTGGAATTCCCTGAACTGGATGCTCTTCTCTGAGAGACTGTGTCTTCTCTTGTACCCAG
Seq C2 exon
GTCTGGAGAATTGAGAACCTGGAGCTGGTCCCTGTGGAATACCAGTGGCATGGCTTCTTCTACGGGGGAGACTGCTATCTGGTTCTCTACACGTATGATGTGAACGGGAAACCCTGTTACATCTTGTATATCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAATCTTCCAGGACAAGTTCGAC
R:
TGCCAGATATACAAGATGTAACAGGG
Band lengths:
238-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]