MmuINT0172918 @ mm9
Intron Retention
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74470249-74470574:+
Coord C1 exon
chr1:74470249-74470349
Coord A exon
chr1:74470350-74470436
Coord C2 exon
chr1:74470437-74470574
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AGGACTGATTCTGGTCCCAGGTG
3' ss Score
5.11
Exon sequences
Seq C1 exon
CTAAGGTGGAACAGGTGAAGTTTGATGCTCTGACCATGCATGTACAACCTCAGGTGGCTGCCCAGCAGAAAATGGTGGATGACGGGAGTGGGGAAGTGCAG
Seq A exon
GTGAGTGAGGGACAGGGAGGACAGGTTGGTGAGAAGGGGGTGGTGGAACCCAGGCTGGACCTCATACAGGACTGATTCTGGTCCCAG
Seq C2 exon
GTGTGGCGCATCGAGGACTTGGAGCTGGTGCCTGTGGAGTCCAAGTGGCTGGGCCATTTCTACGGTGGTGACTGCTACCTGCTGCTCTACACCTACCTCATAGGGGAAAAGCAACACTACTTGTTATATATCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175-Vil1:NM_009509:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGTTTGATGCTCTGACCA
R:
GGTAGCAGTCACCACCGTAGA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: