RnoINT0162854 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81703503-81703830:+
Coord C1 exon
chr9:81703503-81703603
Coord A exon
chr9:81703604-81703692
Coord C2 exon
chr9:81703693-81703830
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AGGACTGATTCTGGTCCTAGGTG
3' ss Score
5.69
Exon sequences
Seq C1 exon
CCAAGGTGGAACAGGTGAAGTTTGATGCTCTGTCCATGCACGTACGGCCTCAAGTGGCTGCCCAGCAGAAAATGGTGGATGACGGGAGTGGGGAAGTGCAG
Seq A exon
GTGAGTGAGGGACTGGGGAGGACAGGTTGGTGGGGAAAGGGGTGGCAGAACCCAGTCTGGACCTCATTCAGGACTGATTCTGGTCCTAG
Seq C2 exon
GTGTGGCGCATCGAGGACTTAGAGCTGGTGCCTGTGGAGTCCAAGTGGCTGGGCCATTTCTATGGCGGCGACTGCTACCTGCTGCTCTATACCTACCTCATAGGCGAGAAGGAGCACTACTTGCTGTATATCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTGGAACAGGTGAAGT
R:
TAGCAGTCGCCGCCATAGAAA
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]