GgaINT0047491 @ galGal3
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
NA
Coordinates
chr7:24090855-24091267:-
Coord C1 exon
chr7:24091130-24091267
Coord A exon
chr7:24090976-24091129
Coord C2 exon
chr7:24090855-24090975
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GAGAGCACGTCCCCACACAGGGC
3' ss Score
2.66
Exon sequences
Seq C1 exon
GTCTGGCGGGTGGAGAACCAGGAGCTGGTGCCCGTGGAGAAGCGGTGGTTGGGCCATTTCTACGGCGGGGACTGCTACCTGGTGCTCTACACCTACTACGTGGGGCCCAAGGTGAACCGCATCATCTACATCTGGCAG
Seq A exon
GTGAGAGCCTGTCCCCTACCCAGGGCTCATCCTCAGCAGGGCAGTGCAGGACAGGGCCACCCATCAGCCAGATGGCCCCTGTGGGTCATTCCCTGCCCCTCCACGGCCTCCCCGTCCTGCCTACGTTTCCCAAAGAGAGCACGTCCCCACACAG
Seq C2 exon
GGCCGCCATGCCAGCACGGATGAGCTGGCCGCCTCGGCCTACCAAGCCGTCTTCCTGGACCAGAAGTACAACAACGAGCCTGTGCAGGTGCGCGTCACCATGGGCAAGGAGCCGGCCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(51.9=87.0)
A:
NA
C2:
PF0062617=Gelsolin=FE(48.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGCGGGTGGAGAAC
R:
GCTCCTTGCCCATGGTGAC
Band lengths:
250-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]