DreINT0036222 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:212317-212877:-
Coord C1 exon
chr11:212740-212877
Coord A exon
chr11:212476-212739
Coord C2 exon
chr11:212317-212475
Length
264 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
3' ss Seq
CTGTGCTGTGTCGTCCTCAGGGC
3' ss Score
12.83
Exon sequences
Seq C1 exon
GTGTGGCGTATCGAGAACCTGGAGCTGGCGGAGGTCAGCAAAGCTACACACGGGTTTTTCTATGGAGGAGACTGCTATCTGATTCTCTACAGCTACGAGGTCAACGGCAGGAAAAACTACATCCTCTACATGTGGAGG
Seq A exon
GTAAAGCGGCCTGTTCCCTTCATTACTGCTGACCAGAGTTACTCACAATGACTCTGATTGACTCAGATTGACGCTAGATTGACTCAAATTGACTCCAAATGACTCAGGTTGACTCAGAATGACTCAGATTGACTCTGAATGACTCAAACTGACTCTAGATTGACTCAGATTGCCTCAGAATGTCTCAAATTGACTCTAGATTGACTCAGATTGACTCTGAATGACTCAGACTGACCCAGATCGACTGTGCTGTGTCGTCCTCAG
Seq C2 exon
GGCCGGCATGCGTCTCAGGATGAAGTGACGGCGTGTGCGTATCATGCGGTGACGGTGGATCAGCAGTACGGAGGTCAGCCGGTGCAGGTGTCCGTCACCATGGGGAAGGAGCCACGACACTTCACCTCCATCTTCAAGGGCAAGATGGTGATCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCGTATCGAGAACCTG
R:
AGATCACCATCTTGCCCTTGA
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]