GgaINT1029660 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22034511-22034961:-
Coord C1 exon
chr7:22034824-22034961
Coord A exon
chr7:22034670-22034823
Coord C2 exon
chr7:22034511-22034669
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GAGAGCACGTCCCCACACAGGGC
3' ss Score
2.66
Exon sequences
Seq C1 exon
GTCTGGCGGGTGGAGAACCAGGAGCTGGTGCCCGTGGAGAAGCGGTGGTTGGGCCATTTCTACGGCGGGGACTGCTACCTGGTGCTCTACACCTACTACGTGGGGCCCAAGGTGAACCGCATCATCTACATCTGGCAG
Seq A exon
GTGAGAGCCTGTCCCCTACCCAGGGCTCATCCTCAGCAGGGCAGTGCAGGACAGGGCCACCCATCAGCCAGATGGCCCCTGTGGGTCATTCCCTGCCCCTCCACGGCCTCCCCGTCCTGCCTACGTTTCCCAAAGAGAGCACGTCCCCACACAG
Seq C2 exon
GGCCGCCATGCCAGCACGGATGAGCTGGCCGCCTCGGCCTACCAAGCCGTCTTCCTGGACCAGAAGTACAACAACGAGCCTGTGCAGGTGCGCGTCACCATGGGCAAGGAGCCGGCCCACCTGATGGCGATCTTCAAGGGCAAGATGGTGGTGTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTCTACGGCGGGGACTG
R:
CTCGTACACCACCATCTTGCC
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]