RnoINT0162855 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81703693-81705177:+
Coord C1 exon
chr9:81703693-81703830
Coord A exon
chr9:81703831-81705018
Coord C2 exon
chr9:81705019-81705177
Length
1188 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCTTCTCGCTCATTCCCAGGGC
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTGTGGCGCATCGAGGACTTAGAGCTGGTGCCTGTGGAGTCCAAGTGGCTGGGCCATTTCTATGGCGGCGACTGCTACCTGCTGCTCTATACCTACCTCATAGGCGAGAAGGAGCACTACTTGCTGTATATCTGGCAG
Seq A exon
GTGAGGTCATGCCTGCCCACCTACAGCACATCTGCTTAGCTCTCTACCATCCGGGTCATCACCTACGGGTTGAACTCCCACCTCCAGGGAAACTCCCTCCGGCTTTACCCATCTTGGGTTGGCTTTAGCTCTGAGATCGATCCTTTGGATTTTCCCATTCACAGCTCTTTCCTTGTGGTTCTGAGTCTCTTTTCTGATTCCTGTTACCTGCTCTTAAGTGGGGACTCTGTGTGAGACTCGTGGGTGCAGGGAGTGAGTTATGTGGTATTTTTTCTGAGGCTGGAGCAGAAAGAATATAATATGTTCAAGGTGAGGCCGGGCTGGGAAAGGATTAGAATTGGAGCTGGGGTCCAAATCACAGTCCCTTGGGGTTAGGTTTTAGATGTGTTCAGTCTGGGCTTGAAGGGAAGGGTATATTATGGGACTAGCCAGGCCAGACTTAGGGATGGCTGGGATGTAGCTCAGTGCTTGCCTAACATATGCAAAGCCTCAGGTTCAGTCCTCAGCCTTGCATCTAACCTGGTGCGGTAGCAAATGCCTCTAATCCCAGCATTCAGCAGATGAAGCAAGGAGGATGAGAAGTTCAAGGTCACTTTAGGCTATGTAAGACCCAGTTTAAAAAAAAAATGATAACAATTGGGCGAGGCCTAGTATAGGGATGCGTGCTTTTAGTCCAAGCACTCGTGAGACAGAGGCAGGTTGATCTCTGTGAATTCCATGCTGGACTGTTCTATGTAGCAAGGGCCAGGACATGTAGGAACACACTAGCTGATTCCAACTCAAAAGGAAAGACATTTTAAAAATGTTTACAAATGGGTGGACAGAGAGACGGCTCAGTGGACAAAAGCTCTCGCTGCCAAGTCTGATGTGGATTCATCTCTGAAACCCACATGAGAGGAGAGCATAGCTGCAGGTCTTTGACCTTTAACACTTGCACCATGGATGTGCACCTAGGTGCACTAGTCTCTCTCTGAGACCAGGCCTCAATCTCACAGAAATATGCCTGCCTTTGTCTCCCGAGGGCTGAGCTTAAAGGTGTGTGCTACCGTGCCTGACTCGTGCCCACACACGTAAACACACACATACACATTCTTAGGTATAATAATTTAAAATCGGGGTGGAATATTTCAGAGGCAGAGGGAGAAGGTCAAACTCAGCACCCCATCGCCCCTTCTCGCTCATTCCCAG
Seq C2 exon
GGCAGCCAGGCCAGCCAGGATGAAATTGCAGCCTCGGCTTACCAAGCTGTCAACCTGGACCAGAAGTACAACGACGAGCCAGTGCAGATCCGGGTCACGATGGGCAAGGAGCCGCCGCACCTCATGTCTATCTTCAAGGGGCGCATGGTGGTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGCATCGAGGACTTAGAG
R:
CTGATAAACCACCATGCGCCC
Band lengths:
294-1482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]