MmuINT0172919 @ mm10
Intron Retention
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74423863-74425695:+
Coord C1 exon
chr1:74423863-74424000
Coord A exon
chr1:74424001-74425536
Coord C2 exon
chr1:74425537-74425695
Length
1536 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCTTCTTGCTTATTCCCAGGGC
3' ss Score
8.91
Exon sequences
Seq C1 exon
GTGTGGCGCATCGAGGACTTGGAGCTGGTGCCTGTGGAGTCCAAGTGGCTGGGCCATTTCTACGGTGGTGACTGCTACCTGCTGCTCTACACCTACCTCATAGGGGAAAAGCAACACTACTTGTTATATATCTGGCAG
Seq A exon
GTGAGGTCCTGCCCACCCCACCTGCAGCACATCAGTTCAGTTCTCCTTCCCACCTGCAGCACATCTGCCCAGTTCTCCACATCCCACCTGCAGCACATCAGCTCAGTTCTCCATCCCACCTGCAGCACATCTGCCCAGTTCTCCACATCCCACCTGCAGCACACCTGCTCAGTTCTCCATCCCACCTGCAGCACACCTGCTCAGTTTTCTGCATCCCACCTGCAGCACATCTGCTCAGTTCTCCATCCCACCTGCAGCATATCTGCCCAGTTCCCCACATCCCACCTGCAGCACACCTGCTCAGTTTTCTGCATCCCACCTGCAGCACATCTGCTCAGTTCTCCATCCCACCTGCAGCACATCTGCTCAACTCTCCCCCACTCCTGTCTTCACCCATGGGTTGAATTCCCCAGTTTTTCCCATCTTGGGTTGGCTTTAGCTCTGAGATTGTTCTCTTTGGACTTCCCCATTCACAGCTCTTTCCTTTTGGTTCTGAGTCTCTTTTCTAATTCCTGTCACCTGCTCTATGTGGGGACTCTGTGTCAGATGCGTGAGTGCAGGGGAGTGAGTTATGTGGTATTTTTCTGAGGATGGAGCAGGAAGAGTATACTGCATTTGAGGTAAGCCAGGGCTGGGCTGGGAAAGGATTAGAATTGGGGCTAGGGTCCAAATCACAGTCTATTGGGGTTAGATTTTAGATGTGTTCAATATAGACTTGAAGGGAAGGGTGTATTATGGGACCAGCCATGCCAGATTTGGAGATGGCTGAGATGTAGCTCAGCTGTGGAGTGCTTGCCTAACATACACAAAGCCCTAGGTTCAGTCCTCAGCCTTGCATCTAACCTAGTGTGGTAGCAAATGCCTCCAATCCCAGCACTTAGGAGGTGGAGTAAGGAAGATCAGAAGTTCAAGGTCATTCTAGGCTATATGGAATATTCCAGGCCAGCCTACGATATGTAAGACCCAGTCTAAAAAAAAAATGATGATAATTGTGCAAGGCCTAGTATAGAGGGACACATGCCTTAGTCCAAGCACTTGAGAGGCAGAGGCAGGTTGATAAATTCCATGCTAGACTGTTGTATGTAGCAAGGGCCAGGACATGTAGGGATATACTTACTGACTCCATCTCAAAAGGAAAAACATTTTTAAAAGTGGGTGGGGGCTGGAGAGACAGCTCAGCAGGTAAAATCACTTGCTGCCAAGTCTGATGTGAGTTCCGTCCCCGGAACCCGCGTGGTCGGGGAGACCATGGCTGCAGAAAGTCTTTGACCTCGAAACTTGCACCATGGCTTGTGCATGTAAACTCTCTCTGTAGACCAGGCTGGCCTCAAACTCACAGAAATCTGCCTGCCTTTGTCTCCTGAGGGCTAGGATTAAAGGCATGTGCTACTGCCTGGCTCACACCCATACATGTAAGCGCACACATACACATTCTTAAACAAGTGTAATCGATTTAAAATTGGGGTGGGGTATTTTGGAGGCAGAGGGATAGGGTCAAACTCAGGACCCCATCCTCCCCTTCTTGCTTATTCCCAG
Seq C2 exon
GGCAGCCAGGCCAGCCAGGATGAAATTGCAGCCTCGGCGTATCAAGCCGTCCTGTTGGACCAGAAGTACAATGACGAGCCAGTACAGATCCGGGTCACGATGGGCAAGGAGCCGCCTCACCTCATGTCTATCTTCAAGGGCCGCATGGTGGTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175:ENSMUST00000027366:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCGCATCGAGGACTTG
R:
CTGATAAACCACCATGCGGCC
Band lengths:
295-1831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types