BtaINT0024423 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55992848-55993249:+
Coord C1 exon
chr5:55992848-55992985
Coord A exon
chr5:55992986-55993090
Coord C2 exon
chr5:55993091-55993249
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CACCCTTCTCACCCCTGCAGGGC
3' ss Score
11.59
Exon sequences
Seq C1 exon
GTCTGGAGGATAGAAAACCTGGAGCTGGTCCCCGTGGAGCACCAGTGGTATGGCTTCTTTTATGGGGGAGACTGCTATCTGGTTCTCTATACGTACGAGATGCATGGGAAGCCTCATTACATCCTGTATATCTGGCAG
Seq A exon
GTAGGCCTGGGGCAGGCTCTTAGCTTTGGATCCTGGTGCTTCCTCTGGCCACTGAGCTGGGGCCAGGGGTGGCAGGGACCCATTGCACCCTTCTCACCCCTGCAG
Seq C2 exon
GGCTGCCACGCCTCACAGGATGAGCTGGCAGCCTCGGCATATCAGGCGGTAGAGGTGGACCAGCAGTTTGAAGGGGCCCCTGTGCAGGTTCGGGTTACCATGGGAAAGGAGCCGCGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGTCATCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCAGTGGTATGGCTTC
R:
AGCTTTCCTTTGAAGATGGCCA
Band lengths:
248-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]