MmuINT0022333 @ mm10
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127010522-127011059:+
Coord C1 exon
chr10:127010522-127010659
Coord A exon
chr10:127010660-127010900
Coord C2 exon
chr10:127010901-127011059
Length
241 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTCCTTTCTCACCACCGCAGGGC
3' ss Score
10.04
Exon sequences
Seq C1 exon
GTCTGGAGAATTGAGAACCTGGAGCTGGTCCCCGTGGAATACCAGTGGCATGGCTTCTTCTACGGGGGAGACTGCTATCTGGTTCTCTACACGTACGATGTGAACGGGAAACCCCATTACATCTTGTACATCTGGCAG
Seq A exon
GTAGGTCAGGCGCAAGCTCTCAGCGCGGTATTGAATCCAGGGGCCTCCCTGGGAAACCCCATTACATCTTGTACATCTGGCAGGTAGGTCAGGCGCAAGCTCTCAGCGCGGTATTGAATCCAGGGGCCTCCCTGGGAAACCCCATTACATCTTGTACATCTGGCAGGTAGGACAGGCAAAAGCTCCGTGTGGTGTTGGATCCAGGGGCCTCCCTAGGCTCACTCCTTTCTCACCACCGCAG
Seq C2 exon
GGCCGCCACGCATCCCGGGATGAGCTGGCAGCCTCAGCCTATCGGGCAGTGGAGGTGGATCAGCAGTTTGATGGAGCCCCTGTGCAGGTCCGGGTTAGCATGGGGAAGGAGCCACGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGTTATCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432:ENSMUST00000026500:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATTGAGAACCTGGAGC
R:
CTCGTAGATAACCAGCTTTCCT
Band lengths:
294-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types