GgaINT0047747 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37132891-37140629:+
Coord C1 exon
chr7:37132891-37133043
Coord A exon
chr7:37133044-37140520
Coord C2 exon
chr7:37140521-37140629
Length
7477 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
GAGGCTGTTTCTGTTTGCAGGTA
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTTTGACTTTGAAAGCTTGGAGAACAACGTGGAAAACTCCATGGACAAGTCCAAGCCTTGGAGCCGGTCGATCGAGGACCTGCACAGGGGCAGCAATTTGCCCTCACCAGTTGGCAACAGTGCCTCGCGCTCTGGCAGGCACTCCACGCTGCG
Seq A exon
GTAAGGCACCGAGGCTGTGCAGGTGGCCTGCAGGCACTGAGTGCCCCATGCCCATGGGACTTTCCAGTTAGGCCGGCTTCCATCTTCCCTCTTTGCACAGTGCAGGCTTGGCACATGTAGGAAACGTGTCATTGCAGTGATGGTTTTGAGGTGGAAGGAAGCGCTAAGCTCATAGCGCAGGGCAGCACTGCAGCAATTGAGGAAGTTAGATGAGTAGTGCTGCCTCTGTTTCCAGTGGCTGCGTGGTCTAAGGATGCACGATACGTTTCCGTCAGGTATGCTGCGCCTTGCCCAGAGGAAGCACTTACTGCTCTCCAAACAGTATGTCAGCGTTTCCATGGGCCCAGCCAGGCTGGAGCTCTGACCTGGTGCCTCATTCAGTAAGGGCTCATCCAAAAGCGTATCCATTCCATTCTGCACTGAGCAAGGTTTATTTGTTAAAGGCCGTTTCCATCCTTCAAACCTTCAGGTAACTCAAACACCACCTCAGGCCTTACTTTGAAGTCTCCCTTTCTGAATATTTGTTGTTATTTTTTTTTCTTCAGTTTGTGGAAAAGGCAAGATCACTTCCCAGGAGTGAACGGCAGTCAGCTGTGTTACGTTACATACGCATAACATACAGTTACAAGGACTTCATGTTCTTACAATCCTTCACTCCTACAAACCAGACTAACTAGCATTTATTGCAGCACAGTTCATTAGGAGCACAGCTCAGAGTGCTGGATGGGGCTGTCCTTATACATGTTCTGACTCTTTTGGCTTTTGTAGAGCTTTGTTCCATGGTGCTCTGAGCACAAAGGAGTCCTGCAGCGATGGAAGCAGTGAGCAGATTTTTGCTGCCTTCCAGCCCAAGCTCAGCTTTGTTTTGCCAGTGCTAACGTGGGCTGTGTGGTTTGTGTTCAGGACTGCCACCCATAGCTGAATGGTGGTGGATGTGGTATCTGGAAGGTACCACAGAGGCATATCAGAGGCATCAGGGAGAAAGCAGAGAGGGGGAGGCAAGCATACAGTGCTGGCAAAAAGATGTGGGCTCTGGAGTGCAGCAGAGTCAGTTGAGTTGTTTTTATTTAATGCTGCAAAGGTGATTTCTGTGTTGTTGATATGCTTTGACTTTTATGTACTTCAGAGGAGGTAGGGCCTTATGTTTGTAGGAGGAGGCCTGATGCTGCTCTCTGTCTTTGGGAGGCATGTCAGTGGTTAGTTGTGCCAGAAATGTGTGTCAGCTATACATTACATGTCTCTTACACTTTTTCTCTTCGTTTCCTTCCACTCTTTTTTCTTTTTTCACATCCCCCTCCTACTTTTTCTATTTTCCATTTCCACATCCCCTTCCTCGCATCTTCCTTTTCCCTCCCTTTTCCAAACCTCTCTCCCTGACTCTCTCTTCTGCATTCCTGACCCTCCTTCCATCACGTGCCATCAGCATGGTCTCTCTACCCGAGCAGCTTCAGCTCAAACACCACCAGAGCTGCTTTTCTTCCAGCTGCCTCTGGAGTGGCTTCGCTTGGCGCTCTGCTGATGGGGCCTCGAGCCAGAAAACCTTGTAAGTGCCAGGCTGAAGTGACACCACATGGGGCTGCCCCGTGTGTGAAGCCCTGCACTGCTCCCATGCCATATAATCCCATAATCACACTGCGTGGGGAGCAGACCTGATTGCTGAGGAGCTTCAACCTACGCGCTATGTGCTTATGGCATTATAGCTTCCCACTGTAGTCTGCTTCCGTAGCGTGGGCTTAGCTAGAAGGAAATAAAGCATGTTTTACTTTAAAACAAGATATTAGTTTGCTTGTAGTATTGCAAGAAGTTTTATCCCTGAGACACCTAGCCATAATCGTTGTGTGCCTTGGTTCGTGTTTTAAACAGAGCTGTTGCTGGAGTGCTGGCTCACTCTTAGATGTGGGCAGGGGCTGCTGGGTTGGGGGGTGACCTGGGCTGGGGCCCCAGTGCTGCCTGGCACTGTGAGATTCTCTGAGAGCACCTCTGTGTGTTGCTTTGCAGCACGAAGGCCTGTGTTCTGCAGGGGGTGGTTTTCTGTGGATGGGGACTACGTGTGTTAGGAAAAGTAAGAGCATGGAATGTTTTTAAAAGTTATTTTTTAAAAATTTTTTGATAAATTTATAAATACTGTGTGCCACACATGCATCCCATGTGAAATGATGACATTTGGTTTGAACAGACACATTTTGTTCTGCCTTTAGCATGTGGTTCTCTCATGTTGGTGCCTGTCTGCAGTGTCACAGCGCTGCTCTCTGCCTGCCTGCAGCTGTGGTCACTGCAGCCCTTGGGATGTGTGCACATGGAGGTATGGTAGCAGGAGATAAGCACAGAATCACTCTTGAAGTGCTGGACAGGGCTGCACCCTTGCGTGCTTGCAAGCGATGCAGTTCTATTGCAGCAAATGGCTCCCTTGCAAGTAGCCATGCCATGGTGCCCCACTGCAAAATGTGGGGTGCCCTGTGCAAGGTGCCTGCTGCCAAGTGCAGGGTGCCTTGCGCCGGGTGCCCTACAGCACAGCCCTCCTGGAGCCTTTCCATCCGTCCCTTTGCAGGGCTGGCTCTCCATTTTCAATTTGTAACTTTCCTTGACTTCCTGGAGCTCTCGTTAGCAGTGTCAGACCTTGCCAATTCCCTGCTCCCTGTTTCCTTGGCAACTGAGATTTTTTTTTCAAGAAGAGGCACAGGGATTTGGGAGGCAAACACCAAAATGAGGGCAGAAGGATAAAAACGGGGATGAATCTTAGGGGATTTTGTTGCTGCTTTTTGGGAGGGAGAAGAGCAGTACTTTGACATGAGAGTCAGACTTTCCTTTTGGATAAATATTCATACAGACTTAGCAGTGTCCCAGCCCATTAGAAATTCCCTTTCTTCTGAGTCAGATATTTCAGTTTGTATGTGGCTTCAATTCAGAAACTTAATGTTTTTTTAATCCAAAAATAGGTTTTGAGTGCACTGAAAAATTGGACTCCCCTTTGGCACTGCTTCTTATGCTGCATGTTTGCAATTGGATGCTGCCATTAATGCTGTGCAGCTGCATCCCTGTGTCAGGCTCTGTGCACTGCGGCTGGCCCTGTGCTGGCGCTGTGGCTGGGGAGGGAGGAGGAGACCAAAGCAGGCTGTCTCTGTTGCTTTTCTGGCTTTTTCGAAGCAGCAAAGTTCTGTGCAGCTTTCTGGATGGATGACTTTCCCAGATTCTGTCAGATAAGACAAAAACTGGAGGCCCAGGGTCATTCATTCGTTTCACATTTGTAGCTCTTGTTGCCTTGGTTTGGAATGACAGAAGGGAAAGGTTTGGGCACCGTGGCCACCTGCTCTGCATCACCCAGCGTGTTTGTGCCCTGACTGCAGCACAGTGCTTGTGGGCTCCCCCTCTGCAAGAGGAGAAATCCCAAGTGCACAGCAAACAGCAGGGCCTCCCCCTTTCAGAGCCCCCATCTGCCATCAGGACAGCATTCCTATTGCAAACACCTCCAAAATCCCAATGGAACCAGGAGTCCCAGTGAACGCAGGTCCACTCTGCTGGGCAGGGTGGCAGGGGGGGCATGGTTCTGGGCAGCAGAAACAAGGTTGTGGTGCTGGCAGAGAGCTGCTGGAGCTTTTGTTTGCTATGAATGCTGTGCGGTGCAGCTCTGCACCATGGGTTGGGTGCATGTCCTCGTCCCCTGCGTGGAGGTCCCCTCAGAGCTGCCGGAGGTGGCAGCAGCTTGGTTTGAGCTGTGTGCGCACTTACCATGCTGGGAAGGGCTTTACTTGGAGCATCTCATTTGTGTAGGTGTTTTAATGAGCTGTAGGTGGGCCTTCAGTGTCCGTGTGAGCTGTTCTGTGCTCTCACACGTTGTGTTTCAGTACAGCTGATGAACTAGTTCTTCTGGAGCAGCTCTGGCGAGGAGGAGGACCTGGCACTGCATTTCAGCCTGCCTCGAGCATCTCCTGGCAGTGCTGCTCCCACGTGGCTGCAGTGTCCCTCTGGGGAGCACTGGGTGCCAGCACAGCCCGGCCCTGTCCCACTGCCTGGCACTGTGAGGTGTGACACAGCCACACGTGGTTGGGTTTCTGCTGCTGCTGTTTTCAGAAGTAGGGTTTTATAGTTCTCCCTTAAAGGAGGAGCGGGGAAAACAAAAGCAGAGCCATCTGAATTGAATTAGCAGAATAAACACGCTCTTGGTGACGCATCTCTGACCTGCAGCAGGCAGGAAATCAGAAGCAGCAGCTCACCCAGATGCTTAATGTTTGCTAGCAAGAAATAGAATAAAGGCAGGAGCAGATCATCCACGCTGTATGAAAGGAGGTGGTGAGGACTACTGCAAGCCTGTCTTGCCCAGGAAGGGAACAGGCCCAGGGTGTTGCAGTCAGCAACAGAAAGCATCATGCTCCCTGATCCCATCATTGTAAAAGAGTTTCTGCTCAGAAAAAGCCCATCAGTTCTTGGCACTCGTGCCTGTGAGAAGAAATTTGCATCTGTTCAGGGAAACCTATCTAAATGTAGGGCAGAACCCTGTCTGTGCAGGGGATGTTTTCTCTGCGCTGCAGCTCTCAGTTGTAGATTGTATGTGGGTTTCTCAGCCCGGCCACACAGCAGCGTGGATGGGCACAGGGAGTGCTGCCCGTTCCCCAGCCCCGGAGCAGGAGGGCGCCTTTGATGGGCACTGGGCTGGAAATGCCAAGCTCCAGCTTTGTGCTTGGTTCTCTTGGCTGAGGGAGCCCAGCTCCCACTCGGTAGGTGTGTGAAGGCACTCTGAAATGGGGGGAGATAGAGCAGCAGACACAGAGGAGGCTCCTTTCTTCTTGATATAGATCTCATTGCTCTGCTTATTAAAATTTAAGAGAAAGTAATGTATGCAGCCGTTAGCAGTTCCAATCTGAGATAAGCCATTATAGCAAAGAGCTCTGTACGGCTGGAAAAGGCTTTCCATCTTTTTATCAAGGCTCTTTTCATATTCAGTGAGTTGACTGTGGAAGTGATGTGCTGTGCTCACATGTTGTGCAGCTGTGTTTTGACATCCATCAGTTACAGGCAAGTCAGGAGACTGTCACCTGAACAGTGTTCCCCCAAGTACAGGTGTAGATAAACCTTCCTTATCTCTGTTCCTCACGGTGTGGGTTAAGGGGAAAATCTCATCCATCTGGAGAGAATTGCACTGGAGGATCTGGAGGTCCCTTCCAACCCCTGTGATTCTGTGATTTGGTGAACTGATGCTTGAGGTTTCTCTGTGTCAGTTCTGGGAATGCATTGTGGTTTTGGGGACAGCTGGAGGGAAGGGCCCATAGCAGCACCCTGTGTGCCCGCTCCTGCAGCATGCAGCTGGGGCTCCTTGGCCATCCCTGATCCCACAGAGAGCAGCAGTGCAAAGCATCCAAGCACCCCAATGATTGAGATGAGATAGGAAGAGAGGTAATGGCCTCAAGTTGCACCAGGAGAGAGTCAGGTTGGTATTAGGAAACACTTCTTCTCCAAAGAGCAGTCAGGCAGTGGCACAGCTGCCCATGGAGTGGGGGTCACCATCCCTGGGGGTGTCCCAGAGCCGTGGGGATGTGGCACTGAGGGATGTGGGCAATGGACGTGGTGGGGTGGGTGGGGGTTGGGGGTGGGGATCTAAAAAGGCTTCTCCAACCTCAATGATTCTATGATGGGACGCACTGTGGGCAGCTTAGTGCGAGGCTGCTGGCCCCATAGAGCCTTCCCTGACACAGGAGGGAGCGAGCAGCAGGGTAAAGCCGGCGCCTGTGGGGTTTTGTTCACCAAATCCCAAGGTTCCCAGATCTTCCCTGTGTTAATCCCCTGTTCCCAGCTCACTGCCTCCCCTGTTCCTGTGCTGGGCTCCTTGGGACTCGTTGGCAGTGCACTGAGCACTCGCTGGGGCTCAGGCAAAACTGGGTCAAATTTCCCACAAATCCAAATTATTCCAGAGTGCACTGAGCTGATTTATGCATTCATATCTATGGGAAAGAAAAAAACCTGACTGAATTCTGCTTTGAATTTTGGGGTTTCTTTCATGTCAGCACTGCTGGGGAATGAAGGCAAAGTGTGGGCACAGCTCTGTGCAGGCCAGGCTGGTTCTGCACCATGCCGGAGCTCCCCGTGCTTCCCCTCTCCTGCCCTGTTACTGCTTGTTCCTGTATCTATTATTAACCTTGGCTATTATTAACAATAATGATGTTAATTATTGATTTTAAAGCTACACTTCTAAGCAAAATGAGTAGCATGAATGAAGCAAGTACACAGCAGCATTGGCATTAAGGGGGTACATTCCAGGTACATTCTTCCATCGCTGGCAGTTCAGATTTAATTCTCCCAACCTAAGGATGATTACCTGTATTCATAGCTCCCAATGGCTTTTCCCTCTGTGAACCAGTCCAAGTGCTGTGGTAGTGGGCAGTGGGCATATGGGGGGAGTTAGGTTTGGCCACGGGGATCCTAGAGGGCTTTTCCAGCCTTAATAGTTCCAAGATTGCCATGGATGTTGCCCAGGCTGCAGCGTGGCACTGGGGGAGGTGAAGCTGCAGTTGTTTGAAGTAGCCTTGGCTTTACCAGTATTTACTATACCAGTCAAGTTTCATCTGCAAATTTCTTTTGCATAACAAATGCCAGAATTTGCAGAGCTCTCAGCTGCACATGCGTCATGCTGCTTTCCTTTCTGCCTGCCTTTCAGCAGAATTTTATGCTTGCTTCCTCGGCTTTCAGTTCAGAGTGTGACAATTTGCAGTGTGTCGGTGCCTTGCCCCTCTGCTGGGCTGCAGCTGGAGACATGCAGGACCAGCCTCAGGCTCTGTCACTTTGTTCTCACCTCTCTCTTTCGTAGGTGTAAGTTAGGATTAAAAATGTGCTGCTTATTCAACGCTGTACATGGCTGTAAGAATATACATGTATTTCGTATGGCAGCCTGTCTCCTTGTCTCCAATTTCCTGTGCTCAGCTCACGAAGCATGGTTTTCCTTAAAGAAAATAAGCAGCATCTTGGGAAGAGCTGAAATGTGGGTTTCATTTACTATGCTGTAGAAGCAGCAGATTGAAAGATCTCCCTTTGTGTTTATTCCGTGTGCTTATTGAATTGAACTCAAGGTTGATTTACCAGCTAGGGGTTACAATTAGGATAATTAATGCCTCTGTTTGGGGACAGTTCCTAAAGGCTGGGTTTCCTCCGTTTGGAGAGCTTTCAGGAAGCTCAGCTGCAGAACAGAATAGAGGCACAATTCTTCAGCAAAAAGCACCAGAAATTAATACATTTGCTGATGCCTACAAACGTTCAGTTTCATTAAGAGCCTGTGCAGTTGCTTGTATAGGTCAGTGCGCACCAGCAGAGCACAGCTGGAAACACAGAGCCCATCTCCGTTGGGGTGCTCTGCCCTTCCCTGATGTCTGCTTGGATTTTGCACGGAACTGAGAAATGTGTGCGTTTAACCCAGTGGAGGAATATTCCTATTCCTTTCTTCCTCCCACCTAACAGTAGCCCTGTGACTGATGGAGGCTGTTTCTGTTTGCAG
Seq C2 exon
GTACAATACTTTGCCAAGCCGAAGAACTCTAAAAAATTCCAGACTAGTGAGTAAGAAAGACGACGTTCACGTCTGCATCATGTGTTTACGTGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(10.7=25.0)
A:
NA
C2:
PF063718=Drf_GBD=PU(45.3=91.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]