GgaINT0047997 @ galGal4
Intron Retention
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15337846-15338454:-
Coord C1 exon
chr7:15338343-15338454
Coord A exon
chr7:15337870-15338342
Coord C2 exon
chr7:15337846-15337869
Length
473 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGTTTTCTTTTGCTTCTAGCAG
3' ss Score
8.73
Exon sequences
Seq C1 exon
GTTTCCTAGATCTAAAAGAAAGGCCGAGTTAGAGTACCCTTCCAAAATGGCTGCTATTAAGGAAGAGAGAGAGGTGGAAGATTACAAGAGAAAAGGAAGACGATCATCACAG
Seq A exon
GTGAGAGGATTGCCTTTTTTTAGTTATAATAAAGTAGCTTTACGGGGAAGAGATTTAAAAACAGAAAAAGTAGAACCTAACTGGTTCTGTCTGAGCATTAATTCAGAACAACTTCTACCTTTTTCAGCCTTATAGTAGCAGAATAACTGTAAAATGCTGTATGTTACTTAGAGCTTTAAGGGGTGGGATTTTGAGCATAGTGGGGAAGTTTTGCTTTCCTAGTTACGTTATAACAAAGCTGATTAAATGAATGCTTGCGACTAAAGGTGTAGTTAGTATTTTTTTTATTTATTTTAAGAAATTCATACCTCCTCAGAATACTGACAGGAACTCGATTCTTTCCTATCTTCACGGTCTTGTTTTTAGTGGGATTGAAGACAGGTTCTTTTTTAATAAAAATGGTTGCCTGTTAGTCACTGCAAATGAAAGCGAGGCTGTACTAAGTAAAAATAACTGTTTTCTTTTGCTTCTAG
Seq C2 exon
CAGAAATACCGTAGACTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]