GgaINT0047997 @ galGal3
Intron Retention
Gene
ENSGALG00000009250 | HNRNPA3
Description
NA
Coordinates
chr7:16936192-16941280:-
Coord C1 exon
chr7:16941169-16941280
Coord A exon
chr7:16936315-16941168
Coord C2 exon
chr7:16936192-16936314
Length
4854 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATTTTTTTTTATTTTTGTAGGGC
3' ss Score
9.58
Exon sequences
Seq C1 exon
GTTTCCTAGATCTAAAAGAAAGGCCGAGTTAGAGTACCCTTCCAAAATGGCTGCTATTAAGGAAGAGAGAGAGGTGGAAGATTACAAGAGAAAAGGAAGACGATCATCACAG
Seq A exon
GTGAGAGGATTGCCTTTTTTTAGTTATAATAAAGTAGCTTTACGGGGAAGAGATTTAAAAACAGAAAAAGTAGAACCTAACTGGTTCTGTCTGAGCATTAATTCAGAACAACTTCTACCTTTTTCAGCCTTATAGTAGCAGAATAACTGTAAAATGCTGTATGTTACTTAGAGCTTTAAGGGGTGGGATTTTGAGCATAGTGGGGAAGTTTTGCTTTCCTAGTTACGTTATAACAAAGCTGATTAAATGAATGCTTGCGACTAAAGGTGTAGTTAGTATTTTTTTTATTTATTTTAAGAAATTCATACCTCCTCAGAATACTGACAGGAACTCGATTCTTTCCTATCTTCACGGTCTTGTTTTTAGTGGGATTGAAGACAGGTTCTTTTTTAATAAAAATGGTTGCCTGTTAGTCACTGCAAATGAAAGCGAGGCTGTACTAAGTAAAAATAACTGTTTTCTTTTGCTTCTAGCAGAAATACCGTAGACTGAATAAGGTGCGTAGTATAGAGAAGATGGTGGGTCTGTTCTGGGAGGATGGGAGCTAGTTACTTTGGGGCAGGGTGTGGAAACGGGAGGGGGGGGAATCTTGATACCCTTCAGAAAATCTTAAGATCAGCAAAGAGGGTATTAAATAATGCTTGTGTGGCTTATCACTGAGACTTTTTGATTGTGCGTTTTCATGTATTTGCCTTCTAACGTTACTTTTCCAGGGTGACTGAATAGTTTAGCTAGCTGAACCCATGTTTCTCTGGTGCCGATATGCCGCTGTCATGTTGAGAGGGAGGCAGTACACCCTTAAACAAACAAAAAAAAAACCCTTTTCCTAGTTACATTTATCCGGTAGCGTATGGTTACTTTGTATTGAAGAATTGTGTGTGAAGTCCTCCTGCAATGAACCTCGCAGCTGTCTGCTGCTGCTGGACTTGGGATAGAATGTATCACAGGTCCTCAGCTGCCTACAATGAGCCTGGAACGCACCTACAGGTTATTAAGTTTCTAGAGAAAATGTGTTGCCGAGAAAGTTGTCTGCGGGCTTTCAGTCCCAGGAGGCGGCCAGGCGTTGGGCTGCAGTCCCACTGTGCGGGTGGAGCTGCAGATGAGCTCCTGTTAGCTCCCGTGCAGAGGTGCAGTGCAGGGGACGTTGCCATGTGCAAGAGAGCCTGTAGAGCCCCCCGGCTACAGAGCACTGAGTGGGCAAAGCCCTGCTGTGTGAAAGCTAGGATTCCTGTAAACTCAAAAAGTAGTCATGTATCTGCAGCGCTGTTGTTTAAAAAAAAAAAAAAATACCTTGGGATGTTAGCAAAGCTTAGGATTTCTACAGGCATCGCAAGGTGCTGCTCATTGCCATCCTTTCTTCCAAGGAAGTTACACGTAGACTGAGCCAAGTATTCATGATTTCATGTGGGCTACAAGGAGTGTGTAATTTGATTTTGATCATGGAAGAAAAACGCAGAGAGATCCAGATGCTCCCTCCCGAATAAAAATAGAAGAAAAGCCAGCCTCTCTCGCTGCTGTCTGCCTGCAGGGGCAGCCCAACCCCCACCCATCAGTCTGGGTGCCTGTGCCGCAGCAGTGCTGGGACGTGGCTGGGTGGCGCCACTGCGCCTGCGTGCTCCCGCTGTGCCTTGGCCCTGCCCCTCCGGCTCCATATTGAGTGCAGCGGGCAGATGGCTCACAAAATGGAGGCGGCCTGCGCCGTGTAGGGCTTGGGCTCGAGGAGAAAGTAGGTAGTCACGGCAGGAATGAGGGCTCCCCGCCTCCTCAGAGCGTATCAGTTTCTTAGAGAAAGCCTTTAAAGTGCTTAGGTGGAGAAATGAAGTCTCTTTCCCGGTTGCTAGCTGCAGGCAGGCACGGCGCTGCCACCCCCACCCCCTCCCTGAAGGAGCTGCAAAATGGCGTGCGGGTCTGTGGCGCTGAGTGGGAGGGAGCTGCGGGAGCAGCACGCTGCTGAGGGGGAGGGGTGTCACATTTGCTACCCAGAGACTGCTATTGTGACCGCTTCGTAGCGGAAGGATTGCGAGATAGCATCATGCCTGACAGAACAGCATGCTGAGAGCCTGAGATACCTATCCCCTGTGAGAACAAAATGCCTGAAAAATAGCTCATCGCTACAAAGTACTGCCTTCTGTTTCTTTAGAGATCCTCTGACACAGATTTATTCTGAGGAAAATAATCTCTGGTGGAAGAGAGAAGTTAACTGCAAGTGGGGTTTTTTCCCCTATATAAGAGCAGCCGTTCATTTTCATGGAATAAAAATAGAGAGAAGGGTTTGATTTTCCTTTCAGGAGTGACCTGGAGTTCTGTGGTCATTCTTTTAAGGTGGAAATGATCTGAGTTGTTATTTGACAACTACACGGCCTTAAGTAGTCTTAGAGAACAACGTAAAGTCTGGTTTATGGGTTTCTGGTTTTGGAGAAGTCTAAGTTCATCAAAGTAGTGAACTTAACAGAATTGATTCCTCGTATTATGAGCGTTCAAAACACTTAAAAATCCCAGCTTTAAAATACCCAGCTAAAAATTAAGTAGCTACAAAGAAATGCAGTTAGTAACAGAGAACGGTGTTTCGCTTACCCTAGAGCACCTTCTGCATGCAGTGTGTTAACCCTTCAAGAGTTTAAGTTTTCCTGTAATTTATAGGGAGATTTTTTAAATCATACTTTTGTAGTCTGTACCACTTAGGAAAGAAGTTTTAACTTTAGCCAAGAGGCCGTGGTCTGTTGGCTGTTGATATAATTGTGTAGTAATGAAGCTGGTGCCTCAGACTAAAACTTGTTAGTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACTAAAACTTGTTAGTGAAAATGCTGGAGATTGCTTTTTGTGCTGAAGGATTTACATCCCAGATGGCTTTCTCACAATCGTAGGCACAGTTTCTTGCAGTACAGCCCAACAGCTATAATACAACGGACCTTTAAAGCTGCATGTAATTCTGAAGTTCTCTTTTGCAAAGTATTGCTTCATACTGCTCTGTAGAGTGGTTGTGTAGCACTCAAGGTTTTTCTGACCAGCTCTTGCACTAGCATCTTTCTTATTTAAACTGGCAGAAGCTAAAGCACTTCACTTGCAGGCTTGAGGCAAGACTGCTTCAATATTACTAGTCTGTGGCTAGTTTTATGTAGTTCATGCCTGAGGATTATGCTGCTTGTAGTCAGCTTAGACCACCGCAATGGGAATAGTGAAGCCCATTGTACGTTACTACTGCAGAATTGAAGTGGTGTGCTGGTGTAGCCAGCAGCACAGCCAGCCGGCACCTTGCTGGGAAGTGTCTTGCGCTTGTGAAGATACCAGATTGCAGAATAAGACTTTAATGTGATTACTTGTTAGAAGACTGCTTTGTCTTGGGGATGAGAGAAAGTTGTAAATGATTTTTTGCGAACTCCTTTCAGATGTGCAGGGCTATTTCCTGCATAATTAAGATACTGTGTAACACTAAAAGAAAGCAGAAACACGAAGGCACTTGCACTTACAGGCCCACTTTATTTTTTCTTTGGAAGGCTGGGCTTGAAAATCAGCTTGTTTTAAAATGTGACTAATCACGTGTAGATGATGCCATCAAGAGCTTCAGTTCAACTCAAGTTTCTTTTAACTTTTTGCTAAGGAACAAGTCCTGCTTGACTTGTTCTCCCCATCCTTGGTTATTCATTAGTCTTTTTTTTCTGTAGGACAAAAGTCAATTTACATTTAAGAGGTAAAACTGAAAACCATGACATACTTCTACTTTTTTTGCTTGCGTGTGCTCAGCTAATAGTTACCCAAGAACAAAATCTGTAATTCTAAGGAATTAAGAGTTGACAAATCTTCTTCCAAATGTGTACATTTTCAAAAGGGTTTTAATACAAATGTTCCCAAACACGAGGTGTTGAATTTGAACAATAACTTTTTCTTTTACCCTGTTTGTATGCTGCAATCCTAATTTTTTGATAGCTTCTTGCAGTTCTGCTTCATGAAGTGTTAGAGCTTCCTTTTATCTAGCAGTGCTTCATTGCTGATCCCTCCAGAACAATATGCAACTCCAGTATAGGATAGGCATAAAATGAATGCATTTCCATGGAGGAAGGAAGGAAGCAAGCTACTTAGTATATTGAGATCTCTTTACTGTTGTTTGCATTTGAGCATTCTGAAGTTGTTAGCTGCCGTTTTAATTAAAATCACACTTCATTAAGTGTTGAACTTAACTGTGCTGCTGTCTACAATCGTTAGAAGACATTATGTTAATGCGTTCGACCTATTTGTAGTTATGTGCACAGATAAGTTTTAGTAATGCTGTGGAATTTTAATTCTGTTGTTTGTATTCAAAATGTGTATTTTATTTTTTTTTATTTTTGTAG
Seq C2 exon
GGCCATGAGCCTAAGGAGCCAGAGCAGTTGAGAAAGCTGTTCATTGGAGGTCTGAGCTTTGAAACAACAGATGATAGCTTGAGAGAGCACTTTGAAAAATGGGGCACACTCACGGACTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=NA C2=0.191
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142591=RRM_6=PU(40.0=71.8)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]