MmuINT1020749 @ mm10
Intron Retention
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75659267-75661588:+
Coord C1 exon
chr2:75659267-75659323
Coord A exon
chr2:75659324-75661465
Coord C2 exon
chr2:75661466-75661588
Length
2142 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TATTGATCTTTTTTCCTCAGGGC
3' ss Score
9.62
Exon sequences
Seq C1 exon
CTCTCGGTCCCATATTGAACTCGAGTTGGAAGAGGCGAGTCCGGTCTCAAAATGGAG
Seq A exon
GTAAAACCGCCGCCCGGTCGCCCCCAGCCTGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGTATTAGGGGGAGAGCGGGGGGTTGCTGGGTAGTTGCCGGCATGGGGGGGCTTTGGCTCGATGGGAGTGGGGAGGCCGGGGAGACCGGGACGATCGTCCCGCGCTTTGCGCTGAGGGCGGTGGGAGGGGGAGGGGAGCGGGCCGGGTGGCCTCCTCCGGGCCCTCCGTCGGCCTGGTCCTCTCGGTCGGCCGCACCGGCAGCCCTCGAAGACGCGGCGGGGCCGGGGAGTGGCTCGGCAGCCGGGCGAGGATGCCCTCGGGCTGCGCGGCCTGACTTAGCGAGGCCGCGGGCGGCATGGCGGGCCTCCGCGGGAGCGGTTGGGAGGAGGCGGTGGGGGAGGGGAGGAGCACATCCGGGCGAGCGAGCAGGCGGGCGGCGGCCGCATTGACATTGATCCGCCGCCGCCGCGTTACGAAATGGCGCAGTGGCCCGCAATGGCCGCCGCCTGGCTACGCCGCCAAGAAGGAGTGCGCGGGGATTGGAGGGGACGGCGGGAGGCGGCCCGGCGTTTCTGCCGCAGATGGCCTCCAGGCTCCGGGCGCGGTGCTTTCCGCTGGGGTGCTCCCGACGTGGATCTAGGCCTTGGCGGGCCTTCTGGGTGATGACAATCCGCGCAATACTCGGGCCGGATTTTCTCAGCGCTCATTTGGGGATACATTACTGAAAAGCTTGCTGCTTTAAGGTGCTTCCTAACCCGCTGCTTGTGCTCAAGTATTTGGAATGAGAGTATTTACAGCGTCCTGTGGTTGAAGTCTTAACCATTTCGGGGGTTTGAGTGTAGATGTGTTTACTTGGAGCTTAATATTTTTATTGATCTAATTTCTCATACTTCGGATTGGCCCGGATTTTGGTTTTCCTGGATTTTGGTTTTAGAGAACTGCGACCACACTAGAAAATACCACGATTACGAGAATTTTGTGTGTATAGAGATGCTTTTTGTGTATTGTCAAATTCATTTATGCGAGGCTTGAATAAAGGGGTTTTACGTGAATTTGGGTAGTTGGGTTTCTGGTATGTGGCTGTCTGCATATTGAATGTTCTAACTAATATTTCCAGAAGATGGAAGAAAGTGAGCCCCCTTTAAGGGCTTGTGTTGAATTGTCTTAATGCGTTCATTAAAAGCGGTTCACTCGAAAGTAAAATCTTCAAAAAGAAAACCACAGGCTAGATATTTTCTAAGTCTCTCAGTTACGGTTTTGTTTCTAATTCCTCTGGTCAGGCGGTATATGCTATACCTTGTAAATCCAAATTACACGCTTGTGAATGTAAGGATCGCATTCGAAATAACTTGAAACTATATGATGTAAGTGGGTATAACCAAGGTAAATTGATTACAGAAAGCTAAGTAGTGGAACCAGGTGTGAATGGTGCGTGCACACCTGTTACCCTAGTATTTGAAAGGCTAAGGTAGGACTGCCTCAAGTTCAAGGCTAGCTTAGCCTGCCTTTCCTTGAGAGCCAGCCTCAAAACCCTCACCCACCCTTTTAACCCCCACAAGGTATCACGGGGTTAAGTCTTGGCTGTGTTTTGTGGGATATGCCTAATTTGCTTGGGAATGTCTTTTAATAACTGAAATGTTATTAGCTGGAAATGTGAATTTCTCTTAATTTCCCGTTGTAAGCTTCTAAGTTGCATTTCATAGATCATGTTTTAAAATTACAGGTTTGTTGGTGTTGCAGACTGAGGACAGTGGAGATGGCACGGGCAGTCTTTGGGGTTTATTTTTCTAGTGAATGATTTGTTAGAAACATCTGAAATACTCTAGACTTTTTAGTTGTAGCTTAAAGTTTAAAAAATCTGGGACTGTTTGGGGGTTCAGTTTAATGTGACCCCAGATACCATTTTAGTGGGATATTTTTGTTTTTAAGACAACCTACTCCCTATGTACCTCATACTGGCCTAGAAGAACTGACATAATCCAGGCCAGCTGTCTCCCAAACGCTGAAATTAACTGGTGTGTACTATCATGCCCAGCGTGGAGCAGGTTTTTTAAATGGATGGAATATTGATGTTACAGATTTGAGACAGAACTTCATTTTATCCAAGAAATAACTATATTGATCTTTTTTCCTCAG
Seq C2 exon
GGCCATGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005:ENSMUST00000111962:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142591=RRM_6=PU(40.0=68.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types