GgaINT1031115 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:15333911-15337869:-
Coord C1 exon
chr7:15337846-15337869
Coord A exon
chr7:15334034-15337845
Coord C2 exon
chr7:15333911-15334033
Length
3812 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
ATTTTTTTTTATTTTTGTAGGGC
3' ss Score
9.58
Exon sequences
Seq C1 exon
CAGAAATACCGTAGACTGAATAAG
Seq A exon
GTGCGTAGTATAGAGAAGATGGTGGGTCTGTTCTGGGAGGATGGGAGCTAGTTACTTTGGGGCAGGGTGTGGAAACGGGAGGGGGGGGAATCTTGATACCCTTCAGAAAATCTTAAGATCAGCAAAGAGGGTATTAAATAATGCTTGTGTGGCTTATCACTGAGACTTTTTGATTGTGCGTTTTCATGTATTTGCCTTCTAACGTTACTTTTCCAGGGTGACTGAATAGTTTAGCTAGCTGAACCCATGTTTCTCTGGTGCCGATATGCCGCTGTCATGTTGAGAGGGAGGCAGTACACCCTTAAACAAACAAAAAAAAAACCCTTTTCCTAGTTACATTTATCCGGTAGCGTATGGTTACTTTGTATTGAAGAATTGTGTGTGAAGTCCTCCTGCAATGAACCTCGCAGCTGTCTGCTGCTGCTGGACTTGGGATAGAATGTATCACAGGTCCTCAGCTGCCTACAATGAGCCTGGAACGCACCTACAGGTTATTAAGTTTCTAGAGAAAATGTGTTGCCGAGAAAGTTGTCTGCGGGCTTTCAGTCCCAGGAGGCGGCCAGGCGTTGGGCTGCAGTCCCACTGTGCGGGTGGAGCTGCAGATGAGCTCCTGTTAGCTCCCGTGCAGAGGTGCAGTGCAGGGGACGTTGCCATGTGCAAGAGAGCCTGTAGAGCCCCCCGGCTACAGAGCACTGAGTGGGCAAAGCCCTGCTGTGTGAAAGCTAGGATTCCTGTAAACTCAAAAAGTAGTCATGTATCTGCAGCGCTGTTGTTTAAAAAAAAAAAAAAATACCTTGGGATGTTAGCAAAGCTTAGGATTTCTACAGGCATCGCAAGGTGCTGCTCATTGCCATCCTTTCTTCCAAGGAAGTTACACGTAGACTGAGCCAAGTATTCATGATTTCATGTGGGCTACAAGGAGTGTGTAATTTGATTTTGATCATGGAAGAAAAACGCAGAGAGATCCAGATGCTCCCTCCCGAATAAAAATAGAAGAAAAGCCAGCCTCTCTCGCTGCTGTCTGCCTGCAGGGGCAGCCCAACCCCCACCCATCAGTCTGGGTGCCTGTGCCGCAGCAGTGCTGGGACGTGGCTGGGTGGCGCCACTGCGCCTGCGTGCTCCCGCTGTGCCTTGGCCCTGCCCCTCCGGCTCCATATTGAGTGCAGCGGGCAGATGGCTCACAAAATGGAGGCGGCCTGCGCCGTGTAGGGCTTGGGCTCGAGGAGAAAGTAGGTAGTCACGGCAGGAATGAGGGCTCCCCGCCTCCTCAGAGCGTATCAGTTTCTTAGAGAAAGCCTTTAAAGTGCTTAGGTGGAGAAATGAAGTCTCTTTCCCGGTTGCTAGCTGCAGGCAGGCACGGCGCTGCCACCCCCACCCCCTCCCTGAAGGAGCTGCAAAATGGCGTGCGGGTCTGTGGCGCTGAGTGGGAGGGAGCTGCGGGAGCAGCACGCTGCTGAGGGGGAGGGGTGTCACATTTGCTACCCAGAGACTGCTATTGTGACCGCTTCGTAGCGGAAGGATTGCGAGATAGCATCATGCCTGACAGAACAGCATGCTGAGAGCCTGAGATACCTATCCCCTGTGAGAACAAAATGCCTGAAAAATAGCTCATCGCTACAAAGTACTGCCTTCTGTTTCTTTAGAGATCCTCTGACACAGATTTATTCTGAGGAAAATAATCTCTGGTGGAAGAGAGAAGTTAACTGCAAGTGGGGTTTTTTCCCCTATATAAGAGCAGCCGTTCATTTTCATGGAATAAAAATAGAGAGAAGGGTTTGATTTTCCTTTCAGGAGTGACCTGGAGTTCTGTGGTCATTCTTTTAAGGTGGAAATGATCTGAGTTGTTATTTGACAACTACACGGCCTTAAGTAGTCTTAGAGAACAACGTAAAGTCTGGTTTATGGGTTTCTGGTTTTGGAGAAGTCTAAGTTCATCAAAGTAGTGAACTTAACAGAATTGATTCCTCGTATTATGAGCGTTCAAAACACTTAAAAATCCCAGCTTTAAAATACCCAGCTAAAAATTAAGTAGCTACAAAGAAATGCAGTTAGTAACAGAGAACGGTGTTTCGCTTACCCTAGAGCACCTTCTGCATGCAGTGTGTTAACCCTTCAAGAGTTTAAGTTTTCCTGTAATTTATAGGGAGATTTTTTAAATCATACTTTTGTAGTCTGTACCACTTAGGAAAGAAGTTTTAACTTTAGCCAAGAGGCCGTGGTCTGTTGGCTGTTGATATAATTGTGTAGTAATGAAGCTGGTGCCTCAGACTAAAACTTGTTAGTGAAAATGCTGGAGATTGCTTTTGTGCTGAAGGATCTACATCCCAGATGGCTTCTCACAATCGTAGGCACAGTTTCCTGCAGTACAGCCCAACAGCTATAATACAACGGACCTTTAAAGCTGCATGTAATTCTGAAGTTCTCTTTTGCAAAGTATTGCTTCATACTGCTCTGTAGAGTGGTTGTGTAGCACTCAAGGTTTTTCTGACCAGCTCTTGCACTAGCATCTTTCTTATTTAAACTGGCAGAAGCTAAAGCACTTCACTTGCAGGCTTGAGGCAAGACTGCTTCAATATTACTAGTCTGTGGCTAGTTTTATGTAGTTCATGCCTGAGGATTATGCTGCTTGTAGTCAGCTTAGACCACCGCAATGGGAATAGTGAAGCCCATTGTACGTTACTACTGCAGAATTGAAGTGGTGTGCTGGTGTAGCCAGCAGCACAGCCAGCCGGCACCTTGCTGGGAAGTGTCTTGCGCTTGTGAAGATACCAGATTGCAGAATAAGACTTTAATGTGATTACTTGTTAGAAGACTGCTTTGTCTTGGGGATGAGAGAAAGTTGTAAATGATTTTTTGCGAACTCCTTTCAGATGTGCAGGGCTATTTCCTGCATAATTAAGATACTGTGTAACACTAAAAGAAAGCAGAAACACGAAGGCACTTGCACTTACAGGCCCACTTTATTTTTTCTTTGGAAGGCTGGGCTTGAAAATCAGCTTGTTTTAAAATGTGACTAATCACGTGTAGATGATGCCATCAAGAGCTTCAGTTCAACTCAAGTTTCTTTTAACTTTTTGCTAAGGAACAAGTCCTGCTTGACTTGTTCTCCCCATCCTTGGTTATTCATTAGTCTTTTTTTTCTGTAGGACAAAAGTCAATTTACATTTAAGAGGTAAAACTGAAAACCATGACATACTTCTACTTTTTTTGCTTGCGTGTGCTCAGCTAATAGTTACCCAAGAACAAAATCTGTAATTCTAAGGAATTAAGAGTTGACAAATCTTCTTCCAAATGTGTACATTTTCAAAAGGGTTTTAATACAAATGTTCCCAAACACGAGGTGTTGAATTTGAACAATAACTTTTTCTTTTACCCTGTTTGTATGCTGCAATCCTAATTTTTTGATAGCTTCTTGCAGTTCTGCTTCATGAAGTGTTAGAGCTTCCTTTTATCTAGCAGTGCTTCATTGCTGATCCCTCCAGAACAATATGCAACTCCAGTATAGGATAGGCATAAAATGAATGCATTTCCATGGAGGAAGGAAGGAAGCAAGCTACTTAGTATATTGAGATCTCTTTACTGTTGTTTGCATTTGAGCATTCTGAAGTTGTTAGCTGCCGTTTTAATTAAAATCACACTTCATTAAGTGTTGAACTTAACTGTGCTGCTGTCTACAATCGTTAGAAGACATTATGTTAATGCGTTCGACCTATTTGTAGTTATGTGCACAGATAAGTTTTAGTAATGCTGTGGAATTTTAATTCTGTTGTTTGTATTCAAAATGTGTATTTTATTTTTTTTTATTTTTGTAG
Seq C2 exon
GGCCATGAGCCTAAGGAGCCAGAGCAGTTGAGAAAGCTGTTCATTGGAGGTCTGAGCTTTGAAACAACAGATGATAGCTTGAGAGAGCACTTTGAAAAATGGGGCACACTCACGGACTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]