MmuINT0078460 @ mm9
Intron Retention
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75497316-75499645:+
Coord C1 exon
chr2:75497316-75497446
Coord A exon
chr2:75497447-75499522
Coord C2 exon
chr2:75499523-75499645
Length
2076 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTA
5' ss Score
6.46
3' ss Seq
TATTGATCTTTTTTCCTCAGGGC
3' ss Score
9.62
Exon sequences
Seq C1 exon
GCCTCTTCCTCTCGGTCCCATATTGAACTCGAGTTGGAAGAGGCGAGTCCGGTCTCAAAATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCTGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGGAG
Seq A exon
GTATTAGGGGGAGAGCGGGGGGTTGCTGGGTAGTTGCCGGCATGGGGGGGCTTTGGCTCGATGGGAGTGGGGAGGCCGGGGAGACCGGGACGATCGTCCCGCGCTTTGCGCTGAGGGCGGTGGGAGGGGGAGGGGAGCGGGCCGGGTGGCCTCCTCCGGGCCCTCCGTCGGCCTGGTCCTCTCGGTCGGCCGCACCGGCAGCCCTCGAAGACGCGGCGGGGCCGGGGAGTGGCTCGGCAGCCGGGCGAGGATGCCCTCGGGCTGCGCGGCCTGACTTAGCGAGGCCGCGGGCGGCATGGCGGGCCTCCGCGGGAGCGGTTGGGAGGAGGCGGTGGGGGAGGGGAGGAGCACATCCGGGCGAGCGAGCAGGCGGGCGGCGGCCGCATTGACATTGATCCGCCGCCGCCGCGTTACGAAATGGCGCAGTGGCCCGCAATGGCCGCCGCCTGGCTACGCCGCCAAGAAGGAGTGCGCGGGGATTGGAGGGGACGGCGGGAGGCGGCCCGGCGTTTCTGCCGCAGATGGCCTCCAGGCTCCGGGCGCGGTGCTTTCCGCTGGGGTGCTCCCGACGTGGATCTAGGCCTTGGCGGGCCTTCTGGGTGATGACAATCCGCGCAATACTCGGGCCGGATTTTCTCAGCGCTCATTTGGGGATACATTACTGAAAAGCTTGCTGCTTTAAGGTGCTTCCTAACCCGCTGCTTGTGCTCAAGTATTTGGAATGAGAGTATTTACAGCGTCCTGTGGTTGAAGTCTTAACCATTTCGGGGGTTTGAGTGTAGATGTGTTTACTTGGAGCTTAATATTTTTATTGATCTAATTTCTCATACTTCGGATTGGCCCGGATTTTGGTTTTCCTGGATTTTGGTTTTAGAGAACTGCGACCACACTAGAAAATACCACGATTACGAGAATTTTGTGTGTATAGAGATGCTTTTTGTGTATTGTCAAATTCATTTATGCGAGGCTTGAATAAAGGGGTTTTACGTGAATTTGGGTAGTTGGGTTTCTGGTATGTGGCTGTCTGCATATTGAATGTTCTAACTAATATTTCCAGAAGATGGAAGAAAGTGAGCCCCCTTTAAGGGCTTGTGTTGAATTGTCTTAATGCGTTCATTAAAAGCGGTTCACTCGAAAGTAAAATCTTCAAAAAGAAAACCACAGGCTAGATATTTTCTAAGTCTCTCAGTTACGGTTTTGTTTCTAATTCCTCTGGTCAGGCGGTATATGCTATACCTTGTAAATCCAAATTACACGCTTGTGAATGTAAGGATCGCATTCGAAATAACTTGAAACTATATGATGTAAGTGGGTATAACCAAGGTAAATTGATTACAGAAAGCTAAGTAGTGGAACCAGGTGTGAATGGTGCGTGCACACCTGTTACCCTAGTATTTGAAAGGCTAAGGTAGGACTGCCTCAAGTTCAAGGCTAGCTTAGCCTGCCTTTCCTTGAGAGCCAGCCTCAAAACCCTCACCCACCCTTTTAACCCCCACAAGGTATCACGGGGTTAAGTCTTGGCTGTGTTTTGTGGGATATGCCTAATTTGCTTGGGAATGTCTTTTAATAACTGAAATGTTATTAGCTGGAAATGTGAATTTCTCTTAATTTCCCGTTGTAAGCTTCTAAGTTGCATTTCATAGATCATGTTTTAAAATTACAGGTTTGTTGGTGTTGCAGACTGAGGACAGTGGAGATGGCACGGGCAGTCTTTGGGGTTTATTTTTCTAGTGAATGATTTGTTAGAAACATCTGAAATACTCTAGACTTTTTAGTTGTAGCTTAAAGTTTAAAAAATCTGGGACTGTTTGGGGGTTCAGTTTAATGTGACCCCAGATACCATTTTAGTGGGATATTTTTGTTTTTAAGACAACCTACTCCCTATGTACCTCATACTGGCCTAGAAGAACTGACATAATCCAGGCCAGCTGTCTCCCAAACGCTGAAATTAACTGGTGTGTACTATCATGCCCAGCGTGGAGCAGGTTTTTTAAATGGATGGAATATTGATGTTACAGATTTGAGACAGAACTTCATTTTATCCAAGAAATAACTATATTGATCTTTTTTCCTCAG
Seq C2 exon
GGCCATGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-Hnrnpa3:NM_146130:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142591=RRM_6=PU(40.0=68.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: