GgaINT0048246 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19169331-19169935:+
Coord C1 exon
chr7:19169331-19169569
Coord A exon
chr7:19169570-19169862
Coord C2 exon
chr7:19169863-19169935
Length
293 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
CTGTCCTCTGCTTCTTCCAGAGA
3' ss Score
9.24
Exon sequences
Seq C1 exon
CATGAGGCTGCTGTAGTACTGCAAGATGCCATTGATGAATTCTCTGGAACTCCTGAGGAACTAAGGGTCATGATTGCAAATGCAGATCTGGAAATTGCTCAAGGAGATATTGAACAAGCCTTGGCTATGCTCCGAAGTATTACACCTGAACAGCCTTACTTTGTACAAGCTAAGCTGAAGATGGCAGACATCTATCTGCAGTGCAGGAGAGATAAGAAGTCATATGCCGCCTGCTACAG
Seq A exon
GTAGAAGTTTGTGATGTGTATGTGTACTATTTTCCAAGATGTTAAATGGTAGCATCTTGAGTTTCTTTTTTCTCTTTTTGCTAAAACAAGTCACAAATTTAGTGATATAATGAACTCAAGTGTTCTAACATTTAAAACAGTAATTGGAATTCTTATTTTGGAAAGATTTCAGATTTATTTTAAGAAATAAAAATGAATATCACTAGAGGATAATGTTATCACGCCCTACTTGTTTAGATGCTAACACTGATATGTTAAATACTGAATGTGGTTCTGTCCTCTGCTTCTTCCAG
Seq C2 exon
AGACCTAGTAGAAAAACTGCCAAGTGCTCATACATTTCTTCTTCTTGGTGATGCATATATGAATATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(88.7=78.8)
A:
NA
C2:
PF134141=TPR_11=PU(25.8=68.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGGCTGCTGTAGTACTGC
R:
TGCATCACCAAGAAGAAGAAATGT
Band lengths:
294-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]