RnoINT0157582 @ rn6
Intron Retention
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52325291-52327776:-
Coord C1 exon
chr3:52327625-52327776
Coord A exon
chr3:52325364-52327624
Coord C2 exon
chr3:52325291-52325363
Length
2261 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CAGTATTGGTCTAACTCCAGAGA
3' ss Score
2.71
Exon sequences
Seq C1 exon
CGGGCTCTGGCCCAAGGAGATACAGAACGTGCATTAAGGATGCTCCGAAATGTCACGACCGAACAGCCTTATTTCATAGAAGCCAAGGAAAAAATGGCAGACATTTACCTGAAGCATAGGAAAGAGAAAATGTTGTACATCACTTGTTACAG
Seq A exon
GTAACTTCCCTCCTGCAGCTAACCCGCACGGGTACTTTCTTTTTTCTTTTTTTTTTTTAATTTATTTAATACTTAATAATAATTCTTTGGTTTCCGGGCAAACATCCCCCTCCCCCCTCCCCTTCCTTATGGGTGTTCCCCTCCCAACCCTCCCCCCATTACCGCCCTCCCCCAACAATCCACATTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGAGATCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTGGGTAGGGGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGGCATTGTTGTACATATGGGGTCTCGAGCCCCTTCAAGCTCTTCCAGTTCTTTCTCTGATTCCTTCAACCGGGGTCCTATTCTCAGTTCAGTGGTTTGCTGCTGGCATTCGCCTCTGTATTTGCTGTATTCTGGCGTGTGTCTCTCAGGAGCGATCTACATCCGGCTCCTGTCGGTCTGCACTTCTTTGCTTCATCCATCTTGTCTAATTGGGGGCTGTATAGTGTATGGCCACATTAACTCTCATTGTGAGGCTCAGCGCTGCGCAATGCTCGCGTGCCATATCTCTCTCTGAGCTCCACAGTCTCTTTTACTCAGGGGGNATGGATGCCCCAACATATAAAAAAGACATGTGCTCCACTATGTTCATCTCAGCCTTATTTATAATAGCCAGAAGCTGGTACTTTCTATACTGTCATGTATGTCACAGAGTGGGTTTACAGATCTTTGTCTAGAAGTGGCCATCCACTTTCTGCCTAGGATCACTCTCAACAAGGAGTTTACCCTAAAACAGAACTAAGGTTGCTTCAGTGTGTGGCTGGGTAGTTTCTCAAATCTCCTCATCAAATGTTCATTTTAGATGTGATCTAAATCAAACATTTAGATTTGTTTGGGGAAAGGAAAAACAAGTTAGATGAACTCTGACAGCAACATTATACAGCAGTGATCCAGGGGATAGGCAGGCGTATGTGATACATAGCATATCTGCTATAGAAAAGGAATATATAAGCTACTATGCTTCAACCTCCAAGGTGTGGGTTCACCTTTACTTTTGTGAGTGAGCATAGCTTCAATAGCTTTGTCGAGCAGAGGCTGTAAAAGTTACTGGAACACACATGCATCCATGTTGCTATTCTTTAGCACAGACGAAACGCTAATCACACAGACACACTCGGTGTGCTGGAAGTATGTTTCTACACTGGTTTTAAGAGAGCCCAGTATGGTGGTCTGTAGCAGTAAGCAGCCTGAGGCAAGAGGATTGCCGTGAGTGAATTGGAGAACAGCCTGCCTTATGTAAAAGTTTCAGGCCAGTGAGACTTTGTAGTCAGATTCTGTCTCCAAAAAGCAAAACAAAGGCTGTGATGGTGCACACCCTTGATCTCAGCACTTTGGGAGGCAGAGGCAGGCAGATCTCTGATTTCAAGGCCAGACTGGTCTACAGAGTCAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAAAACAAAAACAAACAAACCAAAACTCAGAAAAACAAACAAACCAAAAAGGTGTAGTTTTTTTGGATGTGCTGCGATGTAATAATGTAATACATGGTTTGCTGCAAAGCAGTCTGGTACATCAGCTATAGACACGCATTCGGGCATCATGTGTGACCTCGAAGTAATGAGTGTCTTCATCACAGAGGCTTCAAGCAGTTAAATAGGACACATTTAATGCTGTACAACGAGCCCAGCAAGGTGCTGTAAACTTGTAATTGTAGCACATTAGATAGTGAAGCAGGAAGACTATTGATCTGAGTGCTGCAAATAAAGGAGAAGCAGATCCTGAAGCAAAACCTTGGTATTTTTAAGGTAAAAAGTTTTTACCTTGAAGATAGGAGCTCTGGTTGTATAGAAGGACAATACAATCTATTCCTTCTGTTAAGGAGCCCTGCAACATGAGAGTTAATATGTTTGCTGTCTCCCTTTACTCTGCTCCATGTATGTCACAAAAGGGAAAGAGTCCATAAAAAGTGTATTCCAGTATATAAAATGTATGCATGTACAGTGTGCGGCTTTTAACAAGGTTGCATTGGCTGTCTGCATTCTGAGGGCTCGTGTATGCTTGAGTTTAATAAGCTTATTAAACTCTTATCTTATCTCCATCTTATCTTACTGGTTTGTAAATGTTGCCTATTTCCAGTATACTAAACAGTATTGGTCTAACTCCAG
Seq C2 exon
AGAAATTGCTGAAAGGATGCCCAGCCCCCGGTCTTTCCTGCTCCTTGGTGATGCATACATGAACATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868:ENSRNOT00000007832:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134321=TPR_16=PD(87.5=82.4)
A:
NA
C2:
PF134141=TPR_11=PU(24.6=64.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]