GgaINT0048249 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19171805-19173668:+
Coord C1 exon
chr7:19171805-19171943
Coord A exon
chr7:19171944-19173561
Coord C2 exon
chr7:19173562-19173668
Length
1618 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
TGTTTATGTATTTCTTATAGTTA
3' ss Score
7.51
Exon sequences
Seq C1 exon
GCAATCAGTTACTATGAGGCTGCCTTGAAAAGTGGTCAGCAGAATTTTCTTTACTATGACTTGGCTGAACTTTTAATGAAACTAAAGCAGTATGAAAAGGCAGAAGTAGTACTTCAGCAAGCTTTAGATCATGAGTATG
Seq A exon
GTATGACTATCATTAATTTATAGCATAATGGGTAATTACGATTACTTGTTTGTGTTTTCTCTGTGGCTGTGGGCAATAATCAAGGTCAAGATCAGCATTTTATTTTTTTTAACAATATAGCACAGGGAACTACAATGTGGTAGATGAAAAATACTCAAAATTAAACTTCATTTTTACTAAAATTCTTGTCAGGCTTTTTAAACTTGAAACATCCCATCAAGTAAATGCAACGTCACACCTCTATATAGGCAAGTTTTTTGCTCTTCTTTGCTAGCAGAAGTTCTGATCTGAATTGATCACATATAGGTGAGTCATTCCTGCTCTTAAGAGAAAAGTTCTTTAAGTGTAAGATGCTGCCAGGTATCCTTCACTGAAAGAAACCAAACCAGTTGCAGATCCCCTTCTATGTATTAGGAATGTGCACTGACAAAGTTAATTCCTTTTTTTTTTTCCAGAATGTGCAGGGAAATGTCAATCCTCTATTTAACTTTATTCTCTTAAAAAATAATAATAATAATAATTAATAAAAGATTGGTTTATCATTTTGTTCTTGACTTAGACATTTAAGGATCCAGCTAACGTGATAATCTTGCTCAAGAGAGCTTAATCTTTCAGTGCAGAAAGATTAAATAAGCATTAAATGGTCTGTCCCACGTACGTTAAAATCTTTTCTTCCATCTTACATTGAAGCAACAACTCTGTTTTTTTTATATCTTTGGTATACAACATGCACAAGAAGAAAGAAATAGTATGTCATTGGCTAATGAATTCTTTTTCCATTGGGCAAAGTATTGAATAGTTCAGCATCTCAGTTTAGAAATGCTAAAATATATTTCCTAAGATGTCAAAGAGAAATGAAACGTAGGGAGCATTACAGAGTGGGCAATCTTACGTAAGGACTAGAACAAGTTGCAAACTGACTTAGAATAGTGTGTCACAGTTACAACACCTTGAAGACAGTTCAATACATTTATATTAAAAAAAAAAAAAAAAAACTTTTATGTTTTATAGTATATAACTGTGCTCAGGACATCACATTCACAAACAGGAGAACTTACAGTATGTAAATACTACCTTATGCATTTTTAACCATTACTCAGAATCAGCATGCTGCTTTTTCAACAGATACTAAAGCATTTAGTTAAAATAACAACTTGTATTCATGTCTGTCTTACTCAGTCTAGTGGAAGAAAGCTACTTTGAGGTCTGATTGGAAATTTCACAGCGCAATCCTGTGCGTTTTTGGTATGGTGACACTGAATCAGTTTGGATGTTTTTCATTGCCTTTAAAGAGGCTTTCTGTAACGCATATAAAGAATGGCTGTTTTTGGTGTCTTACTTAAGTTACTCATATATTTCTGAGAATGCAAATGGACAGGCAGGTAGTTTATATTCTTTTCACAACTTTAAGCATCTTTGCCTTAAATCTCACTCTGTATATTATGATGTTTACTCCTTCCATTGCCTGCTAACTCTTCACACAGTCAAATCACATTCCGAAGTAAAAAAAAATCACTGTGAACTTGTCACTTAAGCTGTTGCCTGGAACATGTAGAGAATTTTGACTTCCCAGGATCAATTCTTAAATGAATCATGTTTGTTTATGTATTTCTTATAG
Seq C2 exon
TTAATGAACTGTCTTCTCTGATGGAAGATGGACGTTACCAGGTTCTGTTAGCAAAAATTTACAGCAAAATGGAGAAGATTGATGAAGCTATCACTTCATTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(15.2=21.3),PF134241=TPR_12=PU(44.9=74.5)
A:
NA
C2:
PF0051523=TPR_1=PU(76.7=63.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATCAGTTACTATGAGGCTGC
R:
CTGCTGTAATGAAGTGATAGCTTC
Band lengths:
246-1864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]