GgaINT0048336 @ galGal3
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22721288-22723557:+
Coord C1 exon
chr7:22721288-22721362
Coord A exon
chr7:22721363-22723504
Coord C2 exon
chr7:22723505-22723557
Length
2142 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TTAAACTAATTCTCTTGCAGTTG
3' ss Score
8.44
Exon sequences
Seq C1 exon
AGTATACATGAGGCAACAACAGCTATATTGTCCCCTGACCAGAGGTTTGCTCTTCTGCAGTACAAGTATGAAAAG
Seq A exon
GTACAAATGCACTTAAGTTTTTGAGAATGAAACCAGGAAGTAAAGGTTTGGAAATAACTGAGCAAGAAAATGCTGTTGCAAGTAGAGGTTGCAGAGGTTGAAAGAGCATGAGAGAAATGTTTAGAAGAGTAAGATGAATATCTGTATAGTAACACTGAAGTCTGAACAGACAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGATTACCATGGGTTGGGTAGGGGCATCAGGTTTGGAAACTACAAGAGAAGGGTATCAAGGATATGTGATCTTGGCTGAAGAGAGATGACTGCCCATGGCAGGGATGTTTGAATGAGGTGAATTTTAAGGTGCCCTCCAACCTAAGCCATTCTACGATTCTATGACTGAGTGAAGAAGCCAAATAAAAACTTAGTGGATGGAAAAATACTGCAAGGGGAGTGAAGCTGGAGGGTTAACCCAGAGAAGTAAGCTAGAAGAGTAGATGGGCATGACATCCAAAGGGTTGTGTGGTTGAGGAGAACAAATGTATGCATATGCTTGCATATATGTGTTATGTATGTATGTATGAGCATGTTACATTGACAGCAATGTAACAGCATGCCTGAGGTGTTAGGACATAAGATTTGAAAACTGAAGTGAATGAAAAGCCCTGCAGGGTTATAGGCTGTCCTCTTGCACATGGTGTGGGCTCAGATGTCCTTGTTTGCTGCTCTCAACAAGTATGTGGAAAACCCCCAGCATAAATGTATCTTGGCTTGGTGCCAAATAAGGTAACAAAGGTCAACCAACATGTATGTTAGTTAGCAAGAACCCCTGGCCCTGTGTGCTTCCACAGGGGAGAACGGAAACCTAATGGAGGTAATAACTTGTCCTGCAGTGTGTGCACTGAGAAGCTAGTTATTTCATTGTTGTTTATTCCTTTTTGTTTTTATTCCTGGAGAGATGTGCATGTTTTGTTTGTAAAAGGTTTAGTGTACACAGCCTTTGAGTGTTTGTTACTGAGCTCCCTCTACATGTTCTGGCAATGCAATCCAAGAACGGCTGTCACAGTGTTCCAGCTGCAGTCCAGTCACAAGTCAGTCACCACTTTTACACAGTTTCATCTTCTTTGCTGGGTGCAGCTAGGCACTACTAGTGCTACTTTCTGTCCTTCTAAATCATTCAGAATTGATTCTTTTTGCTACATTATTAGCAGTAATAAAAAGTCTTATACTTTTCCAGCTACCCTAGACATCCCCTCCACTTGTGATTTATTGTTCTATACTATTTTATATGCTGTAGTCATAAGATGTAACTTTAATGCTGAAACAGTTTTTTAACCTTTATATAGTAGTATGATTGAAAGTTATGTTGTTATTAATCTTAATCACAAGAAAACAGAGTAACAAAATGAATCACGAAGATGTGGACGCTTCTTATATAATAGCCATCTGGTTGTGTAGTACTAAGATATTGTTTTATATCCTCGTATCTTCATACAAATCTTCAAGAACTACCATAGAAGGTAACATTATTGTAGTATATCAACACCATGGTTTAAAACAGACTTCTTCTGCTCCTCATGGTGAGCACATCTAGACAACTGTATTATTATCATCTTTCTCTCAGTAAGTGCCCACAGTGATATAGGTTTCAAGAGGAAGGTTTCTGAGAAATAAGATTTATTTCTGTGACAATATGGATGAAAATATGAATCCTGGAACTAAAGGAACTGCTACAGAAACAGTGCTGGAACTTGAGAGCACTACTAAAAAATAGGATGCCAAGTTAAATAATACACCATGGAAGAAGAGGAAGAAAACAGTTGTGCCAGTAAAGCAGAAGGAGGAGGATTAACTGTACATAGCTGTGATAATCTTGCCATAAAGTTTCAAGAATTTCTGAAAATCTGCAGAATCTCTGGCCTCTGTATCTCTGTCCTTGATCAGTCATTGGCTTCTGGCATAGTAACTAAGTGATGACTCCAGAAGAACAGCGTTACTTCAGTTTTCCTTTAAACCGTACAGAGAATCACTGCCCTTGTAGGTTCATTGTGTTACATCTATCTCAAGCAAAAGTGTGAGGAGGATTTCAGAAGTTTGAGTGGTAACTGAAGCTGTAAGAGATTTGGGTCTTAGTGACACTTTTGTTTTCTTAATATTAAACTAATTCTCTTGCAG
Seq C2 exon
TTGTGGAGGCATTCCTACACAGCTTCATATCACATCTATGATTTCAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(3.8=56.0)
A:
NA
C2:
PF0093016=DPPIV_N=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]